Shewanella woodyi: Swoo_3354
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Entry
Swoo_3354 CDS
T00676
Name
(GenBank) RNA methyltransferase, TrmA family
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
swd03009
]
Swoo_3354
Enzymes [BR:
swd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Swoo_3354
Ribosome biogenesis [BR:
swd03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Swoo_3354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_11
TRM5-TYW2_MTfase
PCMT
MTS
Methyltransf_23
Methyltransf_15
Methyltransf_12
UPF0020
RrnaAD
Cons_hypoth95
GARS_N
DOT1
CMAS
DNA_methylase
Methyltransf_4
RMMBL
Motif
Other DBs
NCBI-ProteinID:
ACA87623
UniProt:
B1KPU0
LinkDB
All DBs
Position
complement(4110519..4111850)
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AA seq
443 aa
AA seq
DB search
MAQFFKAKPNSSKQLSAKVSLQVTRLDHLGAGIAQHNGKVVFIPGVLPGEKAMVQLTEQK
KRYSRAKLLNLETHSIDRVEPKCAHYHQCGGCDLQHLSLEKQRLHKESALVSLMAKLSHT
EAEALVPAIIGEQWHYRRRARLATFYHQETKRTTLGFRAQSSKEVIDISSCPVLAKSLSE
LISPLSKLLNQLASRRALGHVELIDVDNGQFVVVRATKELSDKDKEKLLSFAQEHKVNLI
VQGNEGELLVIKGPKELPFYTLNSDIKLSFTPGNFVQVNGEINRAMVDQAVQWLDVKADE
RVLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVAQARINAKQSDLSDVTFFHTDLSADLS
KEPWLGKVDKLLLDPARAGAFESLQWLKKMKPKSIVYVSCDPSSLARDSEPLLKHGYKLK
KLGLVDMFPQTHHIEAMALFELS
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcacagttttttaaagcaaaaccaaacagttcaaagcaactttcggcgaaagtatca
ctccaggtcacccgattggatcatttgggggctggcattgctcaacataacggcaaagtt
gtgtttattcccggtgtattacccggggaaaaagccatggttcagctcactgaacagaaa
aaacggtactcaagagcgaagttattgaatcttgagactcactctatcgaccgtgttgag
cccaaatgtgcacattatcatcaatgtggtggctgcgatcttcagcaccttagccttgag
aagcaacgacttcataaagagtctgcattagtaagtttaatggcgaaattaagccacact
gaagcagaagccttagttccagctattataggcgaacaatggcattatcgtcgccgtgct
cgtttagctactttttatcatcaagaaacaaagagaaccacattaggctttagagctcag
tcgagtaaagaggtgattgatatctcctcttgccctgtgttagccaaatctctgtctgag
ttaatctcgcctttatctaagctattaaatcaactggccagtagaagagcgctgggtcat
gtagagcttattgatgtagataatggtcagtttgtggtggttagagcgactaaggagctc
tcggataaggacaaagagaagctgctctcttttgcacaggagcataaagttaatctgatt
gttcagggcaatgaaggtgaactcttggtaattaaagggccaaaagagctgcctttttac
acattaaacagtgatattaaattgagctttacaccgggaaactttgttcaagtcaatggt
gagataaacagagcgatggttgatcaggcggttcaatggctggatgtaaaagctgatgaa
cgagtgctagatcttttctgtggtgtcggaaatttcagtctacctctagccaaatctggc
gctgaagtgatcggtgtagaaggggtccctgagatggtggcacaggccagaatcaatgct
aagcagagtgatttgtctgatgtaaccttctttcataccgacttaagcgctgatctctct
aaagagccttggctaggtaaagtagataagttactgctcgaccctgcaagagctggggcg
tttgagagtttgcaatggttaaagaagatgaaacctaaatcaattgtttatgtttcttgc
gatccctcgagcctagccagagacagtgagcctttgctaaagcatggttataagcttaaa
aaattgggcttagtcgatatgttccctcaaacacatcacattgaggctatggcactgttt
gagttgagttaa
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