Shewanella woodyi: Swoo_3540
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Entry
Swoo_3540 CDS
T00676
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_3540
DNA repair and recombination proteins [BR:
swd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Swoo_3540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATPase
AAA_25
Zn_ribbon_LapB
ChlI
DnaB_C
AAA_22
Lon_C
GvpD_P-loop
SLFN-g3_helicase
AAA_14
AAA_18
nSTAND3
Rad51
NPHP3_N
CobU
cobW
ABC_tran
AAA
DUF7125
AAA_19
MMR_HSR1
NACHT
AAA_30
AAA_11
AAA_16
DZR
DUF5906
AAA_28
NTPase_1
ATPase_2
Zeta_toxin
TsaE
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ACA87804
UniProt:
B1KRN9
LinkDB
All DBs
Position
complement(4319985..4321358)
Genome browser
AA seq
457 aa
AA seq
DB search
MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRLSSAKSSGSSVAGYAGAVGGGSK
RLSEVEEFEAQKMLTGIGELDRVLCGGLTTGSVNIISGDPGAGKTTLLSDLVSRMSQIMP
SLYCTAEESLSQFKNRVNRLKLNCNEENLYLMAETSVEAIIAELEAKKVKFAVIDSIQAV
VTELANGSPGSPSQVKSSAQSLTQYCKQNNVTMFLVAHVNKNNETAGPQTLIHIVDCLTH
LECNDGQVRTLRANKNRFGDVDTVGIFRMTERGMLSVDNPSEIFLSGSSTQSPGAAITCI
RKGNRNLLLEIQCLTTETEGEFPQRVCVGLNMNRIKMLTGILRKHTRTKIFHDTYFNLVG
GLKIDESETCIDLALVTALLSSLNDFVVPRTTCIMGELSLNGDVRPIDSGVPRVKEAVQH
GFTEVFIPFRNYHKSMEGLGAKIIPVKTIHELLELIN
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaataaaacagcatatgtgtgtaatgagtgtggtcaggattttcctcgctgg
caaggccagtgcagcgcctgtcatgagtggaacaccatcacagaggtgcgcttaagcagt
gctaagtcatcaggctcatcagtggcaggttatgctggcgctgttggaggtggctcaaag
agactgagtgaggttgaagagtttgaagcacaaaagatgcttaccgggataggagagctt
gaccgcgtattgtgtggaggtcttactacaggctctgtcaatatcatctctggggatcct
ggtgcgggtaagacgacattactgtcagatcttgtttcgcgtatgtcgcaaattatgccg
tctttatactgtacagctgaagagtcactctcacagtttaagaaccgtgttaatcgtctt
aaattaaactgtaatgaggaaaacttgtatttaatggcggaaaccagtgttgaagcgatt
attgcagaactcgaggctaaaaaggtcaaatttgccgttatcgactctattcaagctgtt
gttaccgaattagcgaacggtagtccaggttccccctctcaggttaaaagcagtgcccag
tcattgactcagtactgcaaacagaacaatgtcaccatgtttttagtggcgcacgtgaat
aaaaacaatgaaacggcggggccacagaccctgatccatattgtagattgtttgacacat
cttgaatgtaacgatgggcaggtaagaactcttagagctaacaagaaccgttttggcgat
gtcgatactgtcggtatttttagaatgacagagcgaggcatgcttagtgttgataatcca
agtgagatttttctatcggggtcatcaacccagtcccccggcgctgccatcacctgtatc
cgtaagggaaaccgtaatcttttactggagatccagtgtctaaccacagaaactgaaggg
gagtttcctcaacgtgtctgtgttggtctcaatatgaaccgaattaagatgctaacggga
atattgcgaaaacacacccgtactaagatatttcacgatacctactttaacttagtaggt
ggcctaaagattgatgaatccgaaacctgtatcgacttagcactggtaaccgcacttttg
agtagcttaaatgattttgtggtaccgagaaccacctgcatcatgggcgagcttagctta
aatggcgatgtaagaccgatagacagtggcgttccaagggtgaaagaagcggttcaacat
ggctttaccgaggtatttatcccttttcgtaattaccataaatccatggaagggttaggc
gctaaaattatcccagtgaaaaccattcatgagttgcttgagttgatcaattaa
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