Shewanella woodyi: Swoo_3556
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Entry
Swoo_3556 CDS
T00676
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
swd
Shewanella woodyi
Pathway
swd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Swoo_3556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swd03019
]
Swoo_3556
03016 Transfer RNA biogenesis [BR:
swd03016
]
Swoo_3556
Enzymes [BR:
swd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Swoo_3556
Messenger RNA biogenesis [BR:
swd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Swoo_3556
Transfer RNA biogenesis [BR:
swd03016
]
Prokaryotic type
tRNA degradation factors
Swoo_3556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ACA87820
UniProt:
B1KRQ5
LinkDB
All DBs
Position
complement(4340291..4342399)
Genome browser
AA seq
702 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQANAAVLASMGDTTVLVTVVGKKAEDVGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSENETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PEINPDVISMIGTSAALSISDLPFNGPLGVARVGYTNGEYVLNPNVSQLAESDLDLVVAG
TQGAVLMVESEAASLPEEVMLGGVVYGHDQQQVVINAINELTAEAGKTKWDWTAPAEDTD
LVEKIKGLAEAELTNAYQIADKHERRDAVIALKNAAVAKLVEENADVDLREVDKLLGSLE
KKVVRSRIISGSPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERD
AQKVDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAI
SGHREDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASAN
GEATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN
VSDYLQVGQEVKVKVMEVDRQGRVRLSMKEAQPKAEAAPAAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatcgtaaaaagttttgaatatggtcaacatacagtcaccttggaaactggg
gttatagcccgccaagcaaatgctgcggttttagcaagtatgggtgatacaacagtatta
gtcactgtcgttggaaagaaagcagaagacgtgggccgtgacttttttcctttaaccgtt
aactatcaggaaaaaacatacgcagcgggtaagatccctggcggtttcttcaagcgtgaa
ggtcgtccttcagaaaatgaaaccctgattgcacgtctaattgaccgtccaatccgtcct
cttttccctaacggtttcaaaaacgaagttcaggttatcatcacagtggtttcagttgat
ccagagatcaacccagatgttatctctatgattggtacttctgctgcacttagtatctca
gacctgccgttcaatggtcctctaggtgttgctcgtgttggttataccaatggcgaatat
gtacttaacccaaatgttagccagttagctgaaagcgatttagacctagttgttgccggt
actcaaggcgcagtattgatggttgaatctgaagcggcttcacttcctgaagaggtgatg
ttaggtggtgtggtttatggtcatgaccagcagcaagtagttatcaatgcgattaatgag
ctaactgctgaagcgggtaaaactaagtgggattggacagcaccagctgaagatactgac
ttagttgagaagattaaaggtctggctgaagctgaactgacaaatgcataccagattgct
gataagcatgagcgtcgtgatgcggttatcgcacttaaaaatgcagccgttgccaagctt
gttgaagagaacgcagatgttgatctacgtgaagttgacaagttacttggtagcctagag
aagaaagtggttcgtagccgcatcatctctggtagcccacgtatcgatggtcgtgagcct
gatatggttcgtgcacttaacgttatggcgggtgtacttccacgtactcacggtagctct
ttgttcactcgtggtgaaactcaagcactcgttacttgtactttaggtactgagcgtgac
gctcagaaagttgatagcatcatgggcgagtacacaaaccgctttatgcttcactataac
ttccctccttactctgttggtgaaacaggtatggttggttcacctaagcgtcgtgaaatt
ggtcacggtaagctagcatggcgtggtattaacgctgttatgcctacagctgaagagttc
ccatacagcgttcgtgttgtatctgagatcactgaatctaacggttcaagctctatggct
tcagtttgtggtacttcattagcacttatggatgcgggtgttccaatcaagacttctgta
gcaggtatcgctatgggtctagttaaagagggcgacgactttgttgttctttctgacatc
ctaggtgatgaagatcatcttggtgatatggactttaaagtagctggtacgcgtgatggt
attactgcactgcagatggatatcaagattgaaggtatcactaaagagatcatgcagatt
gctctacagcaagcttacggcgcacgtgttcatatcctaaacgtgatggatcaagctatc
tctggtcaccgtgaagatatctctgatcacgctccacgtatcacgactcttaagattaat
cctgagaagatccgtgatgttattggtaaaggtggtgcgactattcgtgcgcttaccgaa
gagactggtactacgattgagctagaagatgacggtactgttaagatcgcatctgctaac
ggtgaagcaacgaaagaagctatccgtcgtatcgaagagatcactgctgaagttgaagtt
ggtacggtatacaacggtaaagttgttcgtatcgttgatttcggtgcgtttgtgactatt
cttccaggtaaagatggtctagtacacatctctcaaatcgcagaagagcgtgttgctaac
gtttctgattacctacaagtaggccaagaagttaaagttaaggtgatggaagttgatcgc
caaggtcgtgtacgtctttcaatgaaagaagcacaacctaaagctgaagcggctccagct
gctgaataa
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integrated database retrieval system
