Shewanella woodyi: Swoo_3559
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Entry
Swoo_3559 CDS
T00676
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
swd03016
]
Swoo_3559
Enzymes [BR:
swd01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Swoo_3559
Transfer RNA biogenesis [BR:
swd03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Swoo_3559
Prokaryotic type
Swoo_3559
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
ACA87823
UniProt:
B1KRQ8
LinkDB
All DBs
Position
complement(4345129..4346082)
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AA seq
317 aa
AA seq
DB search
MARRSRGRFIDGIVLLDKDTGMSSNFALQRVKRLFNANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYTVTAKLGERTDTSDSDGEVVQTRPINFTQELLMESLEHFRGETMQ
VPSMYSALKHEGQPLYKYAREGIEVPRKARPINVFELNFISLEGDELTLDIHCSKGTYIR
TITDDLGEMLGCGAHVIMLRRTQVAGYPYERMVSLEQLNEMVSQAEADGVEAKSVLDPLL
LPMDTAVSKFREINLAESQAPYLMNGNPVHASGLVADEIVRITIGEEHKFVGIGAMNDDG
MLAPKRLIVIREDEVKA
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcgctctcgtggccgttttatcgacgggattgtactcttagataaagatact
ggcatgagttctaactttgcattgcagcgagttaagcgacttttcaacgccaataaggct
gggcataccggagcgcttgatccacttgcaacgggtatgttaccaatctgcttaggtgag
gcgaccaagttttcccagcatctgctcgatgcagacaagcgttataccgtcactgcaaaa
cttggagagcgaaccgataccagtgactcagatggtgaagtggtgcagactcgcccgatt
aactttacccaagagctgctaatggagtccttggagcattttcgtggcgagaccatgcaa
gtgccctctatgtattctgcacttaaacatgaggggcaacctctgtataagtacgcgcgt
gaaggcattgaggtaccaaggaaggcgagaccaatcaatgtctttgaacttaactttatc
agccttgaaggtgatgagttaaccttagatatccactgttcgaaagggacctacatacgc
accatcacagatgatctgggtgagatgctaggctgtggtgcccatgtgatcatgttaagg
cgaacccaagttgctggttacccttatgagcgtatggtcagtcttgagcagcttaatgag
atggtcagtcaagcagaggctgacggcgttgaagctaaatctgtgctcgaccccctactg
ttgcctatggataccgcagtcagtaagtttagagagataaacctcgctgagtcacaggct
ccatatctaatgaatggtaatcccgttcatgcttcaggcctagttgctgatgaaattgtg
cggatcaccataggtgaagagcataagtttgttggaattggtgcgatgaacgatgacggt
atgttggcgccaaaacgcctaatcgttattcgtgaagatgaagtaaaggcgtaa
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integrated database retrieval system
