Shewanella woodyi: Swoo_3562
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Entry
Swoo_3562 CDS
T00676
Name
(GenBank) NusA antitermination factor
KO
K02600
transcription termination/antitermination protein NusA
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
swd03021
]
Swoo_3562
03009 Ribosome biogenesis [BR:
swd03009
]
Swoo_3562
Transcription machinery [BR:
swd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Swoo_3562
Ribosome biogenesis [BR:
swd03009
]
Prokaryotic type
rRNA transcription factors
Swoo_3562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NusA_N
KH_5
HHH_5
KH_NusA_C
S1
DUF2187
Glyoxalase_4
KH_2
Motif
Other DBs
NCBI-ProteinID:
ACA87826
UniProt:
B1KRR1
LinkDB
All DBs
Position
complement(4349577..4351076)
Genome browser
AA seq
499 aa
AA seq
DB search
MNKEILLVAEAVSNEKGVPREKIFEALEIALATATKKKYEGDIEVRVQIDRKTGGYETFR
RWMVVEDTGEPLENPFSEITLEAAQFEDPEIQLGDYIEDDIESVVFDRITTQTAKQVIVQ
KVREAERAQVVDQFRDKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPG
DRVRALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIQDEMIEIMGAARDPGSRAKI
AVKSNDKRIDPIGACVGMRGARVQAVSNELNGERVDIVLWDDNPAQFVINAMSPADVASI
IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVADMQAKHQAESAKIV
NLFVSALEVDEDFAQVLADEGFTSLEEVAYVPESELMEIDGFDEEIVEALRERAKAAIST
RALASEEALDGAEPSEDLLALEGLERHLAFVLASKGVITLEDLAEQGIDDLIDIEELTEE
KAGELIMAARNICWFGEEA
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagagattttgctagtcgctgaggcggtttcaaatgagaaaggtgttcctcgc
gagaaaattttcgaagcgttggaaatagcattagctacagccaccaagaaaaaatatgaa
ggcgatattgaagttcgtgttcagatcgaccgtaaaaccggtggatatgaaactttccgt
cgttggatggttgttgaagacacgggtgagcctttagagaacccttttagtgaaataaca
ctggaagcggctcagtttgaagatcctgagattcaacttggcgactatatcgaagatgat
attgagtcagtagtatttgaccgtattacgacacaaacggctaaacaggtgatcgtacag
aaggttcgtgaagctgaacgtgctcaagttgttgatcagtttagagataaagaaggtgag
ctaatcactggtgttgttaaaaagagcaatcgcgaaagtgttgtggttgatcttggtaac
aatgctgatgccgtgttattcaaagaagatttgatttcacgtgaaagcttccgtccaggt
gatcgtgtacgcgctttgctatatgcagttcgtccagaggcacgtggtgctcagcttttc
ttaactcgtactaagccagatatgcttatcgagcttttccgtgttgaagtaccggaaatt
caagatgagatgattgagatcatgggtgcagctcgtgacccaggttctcgtgcaaagatt
gctgttaaatcaaatgacaagcgtatcgatcctatcggtgcttgtgtcggtatgcgtggt
gcacgtgttcaggctgtatcaaatgagttaaatggcgaacgtgttgatatcgtgctttgg
gacgataacccagcacaatttgttatcaatgccatgtcacctgcggatgtcgcttctatc
atcgtcgatgaagataaccactcgatggatatcgccgttgaagcggatagtttggctcaa
gcgattggtcgcaatggtcaaaacgtacgtctagcaactcaactttctggttgggagctt
aacgtgatgactgtggctgatatgcaagctaagcatcaggcagagagcgcgaagatcgtt
aacttatttgtttcggcattagaagttgatgaagattttgctcaagtacttgcagatgaa
ggtttcacctcattagaagaggtggcttatgttcctgaatctgagctgatggaaattgat
ggtttcgacgaagagatcgttgaagcgctgagagagcgagctaaagctgcaatctctact
cgtgcacttgcttctgaagaagcattagatggtgcagagccaagtgaagacctacttgca
ctcgaaggtctagagagacacctagcgtttgtattagcgagtaaaggcgttattacacta
gaagatttagccgaacaaggcattgatgacttgatcgacattgaagaattgacagaagaa
aaggctggtgagctcatcatggcagcccgaaatatctgttggtttggcgaagaagcataa
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