Shewanella woodyi: Swoo_3793
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Entry
Swoo_3793 CDS
T00676
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swd03019
]
Swoo_3793
Enzymes [BR:
swd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Swoo_3793
Messenger RNA biogenesis [BR:
swd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Swoo_3793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
AAA_30
DUF5900
Motif
Other DBs
NCBI-ProteinID:
ACA88052
UniProt:
B1KEN7
LinkDB
All DBs
Position
complement(4630676..4633204)
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AA seq
842 aa
AA seq
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MDQLPVLSLLTPLREAFSQHHQVILEAPTGAGKSTALPLAMLDWDELKGKILMLEPRRVA
ARSVAHFIASQRGCQVGEDVGYRVRGESRSQASTRLEIVTEGVLTRMIQQDPELNGIDMI
IFDEIHERHLTTDLGLALALEIQGSFREDLKILAMSATLSGLPLTELMPNAISLKSEGRS
FPVELAYRASTSSQQGRSTHHWIEHMGRVIVELLTLGDEKGIYSHGSLLAFLPGQGEIVK
LQEFLVSRLDLNLFSICPLYGSLPPKVQDKAIAEPSDGKRKVVLSTNVAESSLTIQGITM
VVDSGYKRQASFNARTGVTRLSLKRISQASAAQRAGRAGRLAPGYCLRLWSQEEQGRLLK
ADEPEILHSDLIPMVLDGACWGVKALDELPMLTTASQPNENAAWQLLEQLDVVDKQRKIT
PHGQQAYELGCHPRLAHMLLKAKSLTKGTHLELVGLACILAGVLESRTRGRHGIDISGYL
REAVQGESGKQIRQWMRRLNVNTDLLACITHACNEDIAFLLALAFPDRVAKSRGVSGYLL
ANGTGVTLPEHDALTSADWLVVADFQESEGRTSGRVYLAAQIDVDSFKSRLKFLVEKQEY
CGWDEVKGRFYAESQQRIGQIVLSKSALTKPDPEQIKLAIFEQLRNKGLGLLNMNDKALQ
LQNRLMLAATLDPDQAWPDISHGQLIDTLADWLGPYLNDVKSLSQLRSLDCYTLLLNQLE
WSAQQRLETLFPTHWPMATGTRAGITYDDAGRALLSVRLQEALGMAQSPVLANGKLTVTM
ELLSPAHRPLALTADLASFWQGPYVEVKKEMKGRYPKHLWPDDPANTTPTRFTKKKTLNQ
NL
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
ttggatcagttacccgttctaagcctgcttactccgttgagagaggcatttagccaacat
caccaagtcatattagaggcgcctaccggtgcaggaaagtccacagccttacctttggcc
atgctcgattgggatgagctgaaggggaaaatccttatgcttgaacccagacgtgtggct
gcaagaagtgtggctcactttatcgcctcacagcgtggctgtcaggtgggagaagatgtg
ggatatcgggttcgtggcgagtctcgcagtcaagcatcgacccgtttagagatcgtcact
gagggggtgttaacccgtatgatccagcaagatcccgaattaaatgggatcgatatgatt
atcttcgatgagatccatgagcgccacttgaccacagacctcggcctagccttagccttg
gagatacagggctcatttcgtgaagatttgaagatcttagcgatgtcagccacgctatct
ggcctacctttaactgaacttatgcctaacgctatttcacttaaaagtgaggggagaagc
tttcccgtagaactggcttaccgtgcaagcacttcgtcccaacaaggccgctctacccat
cattggattgagcatatgggcagagtgattgttgagctactcacactgggagatgagaag
gggatatattcccatggctctttgttggcgtttcttcctggacagggtgagattgttaaa
ttgcaagagtttctggttagccgcttggatcttaacctgttctctatctgtcccctctat
ggcagcttgccacctaaagtgcaggataaagcgattgctgagcctagtgatggcaaacgt
aaagtggtgctctcaactaacgttgctgagtcgagtttgaccatccaagggatcactatg
gtggttgattcaggttataagcgtcaggcaagttttaatgccagaacaggggtcactcgt
ttatctcttaagcgaataagtcaggcatcggctgcccagcgggcgggacgtgcggggcgt
ttggcccccggttactgtttgcgtctgtggagtcaagaggagcaaggaagattacttaag
gctgatgaacctgagatcttacactcagatcttatccctatggtgctcgatggcgcttgc
tggggagtcaaagcactcgatgagttacctatgctaactaccgcctcccaaccaaatgaa
aatgcggcttggcagttgttggaacagcttgatgtcgtagataaacagcgaaaaataaca
ccccatggccagcaagcctatgagctgggttgccaccctagattagctcatatgttgctt
aaagctaaatcactgaccaaggggacgcatctagagcttgtggggctagcctgtattctt
gctggggtgttggagtcccgcacccgtggtcgacacggtatagatattagtggctatcta
agagaggcagttcaaggagagtctgggaagcaaatacgccaatggatgaggagattaaat
gttaatacagatctcctagcttgtatcacccatgcctgtaatgaagatatcgctttcctg
cttgccttggcgtttcctgaccgagtggcaaaaagccgcggcgtctccggttacctattg
gccaatggtaccggtgttactttgcctgagcatgatgcacttacttcggctgattggttg
gtggtggcagactttcaagagagtgaggggcgcacgagtggtcgggtctacttagcggct
caaatcgatgtcgattcctttaaaagtcggcttaaatttctagttgagaagcaggaatat
tgtggttgggatgaggttaaagggcgtttttatgccgaatctcaacagcgtattggccag
atagtgttgagtaagtcggcattaactaagccagatcctgagcagataaagttggctatt
tttgagcagcttcgcaataaaggcttaggtttgctgaatatgaatgacaaggcgttgcag
ctgcagaacaggttgatgctagcggcgacactcgacccagaccaggcttggccagatatc
agtcatggccagcttatcgatacattagcggattggcttggcccctatctcaatgatgtc
aaaagcttgtcacaattgaggtctcttgactgttatactctgctgcttaatcagcttgag
tggagtgctcaacagcggctagagactctttttcctactcactggcctatggcgacagga
actcgagcagggatcacctatgatgatgcaggaagggccttgctcagtgtgcgtcttcag
gaagcattagggatggctcaaagccctgtattagccaatggtaagctaacagtcaccatg
gagttgctttctcctgctcatagaccccttgctttgacggcggatctggccagtttttgg
caaggtccctatgttgaagtgaaaaaggagatgaaggggcgatacccgaaacacctttgg
cctgatgacccagctaatactacgccgacgcgctttactaaaaagaagaccttaaatcag
aatttgtaa
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