Shewanella woodyi: Swoo_3929
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Entry
Swoo_3929 CDS
T00676
Name
(GenBank) deoxyribodipyrimidine photolyase-related protein
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_3929
Enzymes [BR:
swd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
Swoo_3929
DNA repair and recombination proteins [BR:
swd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
Swoo_3929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Motif
Other DBs
NCBI-ProteinID:
ACA88187
UniProt:
B1KFL2
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All DBs
Position
4790473..4792068
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AA seq
531 aa
AA seq
DB search
MSLLGSQPTQKLRLILGDQLNAEHSWYKDKSPNTLYLIAELYQETNYTRHHIQKVSAFFA
AMAAFANALEQAGHSVLHLTLDETAQYQDLPTLLNELIDRHQIEEFEYQLPDEYRLRQQL
SLFSRSIDISVKTYESEHFYLSDAELVDYFKVGKKHRLEPFYRKLRARFNLLMEQGSPLG
GKWNFDADNRQKIKVTDFYDVPTPLLFANDVSTILQRVERHNVATIGVVQANLLWPITRH
QANKLLEHFCRYCLVRFGQFQDAMTAKLDLKLGALSEDRQWTLYHSRLSFALNAKLLSPK
HVIDTAITAYQAAKGEITLAQIEGFVRQILGWREFVRGVYWANMPEYAELNRLSATRALP
TWFWSGDTKMNCLHHAIKQSLEYSYAHHIQRLMVTGNFCLISGVAPDQVDDWYLGVYIDA
IEWVEMPNTRGMSQFADGGIVGSKAYAASGNYINKMSDYCTNCHYQVKQSHTNKACPLNA
LYWRFMAQHFDDFSTNPRTKMVYANWLKKPVEDRELILSHAENLLCHIEEL
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgagtctattaggaagtcaaccaacacaaaaacttagacttattctcggtgatcaactt
aacgccgagcactcttggtataaagataagtctcccaacaccttatatttgattgcggag
ctatatcaagaaacaaactacacccggcatcatatccaaaaagtgtcagccttttttgca
gcaatggcagcctttgctaatgcacttgagcaagcagggcatagtgtattgcaccttaca
ttagatgaaacagcccaatatcaagacttacctacactattaaacgagcttattgatcgt
caccaaattgaagagtttgaataccagctccccgatgaatatcgcttaagacagcagcta
tctctgttttctcgctctatagatataagtgttaaaacctatgaaagtgaacatttctat
ttgtctgatgctgaattagttgattactttaaagtgggtaaaaagcaccgtttagaaccg
ttttatcgaaaattgagagccagatttaacttgttaatggagcaaggaagccctcttggt
gggaaatggaattttgatgccgataatcgacaaaaaatcaaagtgacagacttttacgat
gtgccaactcccctattattcgctaatgatgtcagcactattttacaacgagttgagcgc
cataacgttgcgacaataggggttgtccaagctaacttactctggccaattacgcgtcat
caagctaataaactccttgaacatttttgccgatattgcttagtcagatttgggcagttt
caagatgcgatgacagctaaactagatcttaagttaggtgcattaagcgaagacaggcag
tggaccttatatcactcacgattatcatttgcgctcaacgccaagctgctcagtcctaaa
catgttattgatacagccattaccgcttatcaggcagcaaaaggagagataactttagcg
caaatagagggttttgtaagacaaatactaggctggcgagagttcgttagaggcgtgtat
tgggcaaacatgcccgagtatgcagaacttaatagattgtcagcgacgcgcgcgctcccc
acttggttttggagtggcgacactaaaatgaactgtttacatcatgccattaagcaatcg
ctagagtattcctacgctcaccacatccaacgcttaatggtgacaggcaatttttgttta
atttcaggtgtagctcctgaccaagttgatgattggtacttaggggtttatatcgatgct
attgagtgggtcgagatgccaaatacccgaggaatgagccaatttgccgatggtggaata
gtaggttctaaagcctatgctgccagtggaaactatatcaataaaatgagtgattactgc
acaaactgtcactatcaggtaaaacaaagtcacactaacaaggcctgtcctctcaacgct
ttgtactggcggtttatggctcaacacttcgatgattttagtaccaatccgcgaactaaa
atggtttatgccaattggttaaaaaagcccgtagaggatagagagttaatattatcccat
gcagaaaatctactctgccatatcgaagagctataa
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