Shewanella woodyi: Swoo_3993
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Entry
Swoo_3993 CDS
T00676
Name
(GenBank) transcriptional regulator, Fis family
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
swd
Shewanella woodyi
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
swd03000
]
Swoo_3993
Transcription factors [BR:
swd03000
]
Prokaryotic type
Helix-turn-helix
Other families
Swoo_3993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
PAS_9
PAS
HTH_8
AAA_5
Mg_chelatase
PAS_4
PAS_3
AAA
AAA_19
AAA_22
AAA_16
AAA_2
PAS_8
AAA_30
nSTAND3
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ACA88250
UniProt:
B1KGB3
LinkDB
All DBs
Position
4861005..4862465
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AA seq
486 aa
AA seq
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MAKTKAQVVSLQSEFLPENQLILNAVSEGIYGFNLAGNAVFINPAAERMTGWKAEELLGK
NIHNCHHHSHSDGSHYPKEDCPIYNTLNDGIAREISHEVFWRKDGSSFPVHYTSTPVYKD
GKMMGVVAIFRDISIQKQTEKSLREALEQVQALSETLSSENQYLQLELADRTGDVGISGN
SPKIKQLIQQIKLVANTESTVLISGENGTGKELVARNLHKLSKRADKPLVCVNCAAFSAG
LLESELFGHEKGAYTGATNRRKGRFELANKGTLFLDEVAELSLEAQSKLLRVIQEQEFER
VGSSETIKVDIRLITATHHDLLKRVEQGLFRMDLYYRLNVFPIQVPALRDRLSDIPELVS
HLIQDLNRKLGKKITRVSQQGLKKLMLHTWPGNVRELQNVLERETILSQSPVLKLAQLPA
IQAPQQKQSSNSTNQTLAEMEKKHITRVLQQTKWRISGALGAASALGLPPSTLRSRMKKL
NIERPL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaccaaagctcaagtagtatcgcttcaatctgaattcctgcccgaaaatcaa
cttatcctaaatgcggtaagtgaggggatatatgggtttaacttagcgggaaatgcggtc
tttattaatccggcagccgagcggatgacaggctggaaagccgaagagctattaggcaag
aatatccataattgtcatcaccatagccatagcgatggcagtcactaccctaaagaagac
tgccctatctataacacgctcaatgatggtattgcccgtgagattagccatgaagtattt
tggcgcaaggatggatctagcttccctgtgcattacacctcgacccctgtttataaagat
gggaagatgatgggtgtagtcgcgatatttcgtgacatcagtattcagaaacaaacagaa
aagtctctcagagaagccctagagcaggttcaagccctttctgaaaccctctcctctgag
aatcaatacctccaattagagctagcggatagaacaggagatgtggggatctccggtaat
agtcctaaaataaaacagttaattcagcaaattaaactcgttgccaataccgaaagtacc
gtgcttatcagtggcgagaatggcacaggtaaagagttggtcgcccgtaacttacataaa
ctaagtaaacgtgcagataagcctctggtctgtgttaactgcgccgctttctcagctggt
ttactggagagtgaactttttggtcatgaaaaaggcgcctatacaggggcaacaaatcgg
cgtaaaggtcgatttgagctagccaataaagggactctgtttctggatgaggtcgccgag
ttaagccttgaagctcaatctaagctgcttagggtcattcaggagcaggagtttgagcgg
gttggtagtagtgagaccattaaagtcgatataaggcttatcaccgccactcatcacgac
cttctaaaacgagttgagcaaggcctgtttcgtatggatctctattatcgtctcaatgtc
ttcccaattcaggttcccgctctaagggatagactcagtgacatacctgagctagtgagc
cacttaattcaggatttgaataggaaattgggcaaaaagatcacccgagtcagtcaacaa
gggttgaaaaagttgatgctacacacctggccgggtaacgttcgtgagcttcaaaatgtg
ctcgaacgagaaaccatactctcacaaagccctgtgcttaaactcgcgcaactaccagcc
attcaggctccccaacagaagcaaagttcaaattcaaccaatcagaccttagctgagatg
gagaaaaaacatatcactcgcgtgttgcagcaaacaaaatggcggatctcaggcgcgtta
ggtgcagcatcagctttaggcttaccccctagcacactcagatctcgcatgaaaaaactg
aatattgagcgacctctataa
DBGET
integrated database retrieval system
