Shewanella woodyi: Swoo_4178
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Entry
Swoo_4178 CDS
T00676
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
swd
Shewanella woodyi
Pathway
swd03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Swoo_4178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swd03019
]
Swoo_4178
03009 Ribosome biogenesis [BR:
swd03009
]
Swoo_4178
Messenger RNA biogenesis [BR:
swd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Swoo_4178
Ribosome biogenesis [BR:
swd03009
]
Eukaryotic type
Pre-60S particles
RNases
Swoo_4178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ACA88434
UniProt:
B1KHV6
LinkDB
All DBs
Position
complement(5081207..5081752)
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AA seq
181 aa
AA seq
DB search
MAADANNLIWVDLEMTGLEPDVDRIIEIATIVTDKELNIIAEGPVIAIHQSDEQLAKMDD
WNKKHHGESGLVDRVRSSQYSEAQAVAMTIEFLSQHVTKGSSPMCGNSVGQDRRFMTLYM
RELEDFFHYRNIDVSTVKELVRRWDPEVMNGFSKLGTHKALIDIQESIAELQYYRAKVFK
I
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacgcaaacaatctcatttgggtcgacttggagatgaccgggcttgagcct
gacgttgacagaattattgagattgcaacaattgtgacagataaagaactcaatattatt
gcagagggacctgtcattgctattcatcaatctgatgaacaattggccaagatggatgat
tggaataaaaaacatcatggtgaatcaggtttagtggatagagttcgttcgagtcaatat
agcgaagcgcaagctgtcgctatgactattgagtttctttctcagcatgtcaccaaggga
tcttctcctatgtgtggcaacagtgttgggcaagaccgtcgttttatgactctatatatg
cgggagctggaagattttttccattaccgaaatatagacgtcagtacagtaaaagagcta
gttcgccgctgggacccagaggtaatgaacggcttttccaagctaggtacccacaaagca
ttgatcgatattcaggaatctatcgctgaattgcagtattatcgagcaaaagtatttaaa
atttga
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