Shewanella woodyi: Swoo_4217
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Entry
Swoo_4217 CDS
T00676
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
swd
Shewanella woodyi
Pathway
swd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Swoo_4217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swd03019
]
Swoo_4217
03016 Transfer RNA biogenesis [BR:
swd03016
]
Swoo_4217
Enzymes [BR:
swd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Swoo_4217
Messenger RNA biogenesis [BR:
swd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Swoo_4217
Transfer RNA biogenesis [BR:
swd03016
]
Prokaryotic type
tRNA degradation factors
Swoo_4217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ACA88473
UniProt:
B1KIH7
LinkDB
All DBs
Position
complement(5120967..5123447)
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AA seq
826 aa
AA seq
DB search
MIKDPHLKREQENYENPIPSREYILDYLRSEKSPLNRERIAAALKLESEEHIEALRRRLR
AMERDGELVFTRGQAYGLPERMDLLTGTIIGHKDGFGFLKLEEGGDDLFINNRDMLMYFH
GDKVLAQKAGVDRKGRREARIVRLVQQRAAALVGRFHMDSGMAFVIADDKRITQEILIPD
EDRLGARQGDIVVLELTRRPGRYVKAAGKVTEVLGQQMAPGMEIEIALRNYDLPHKWSGL
IEKKLRAIPDEVTEDDKKGRVDLRQLPLVTIDGEDARDFDDAVYAEKKKSGGWRLWVAIA
DVSHYVRTESALDREARSRGNSVYFPSQVIPMLPEKISNGLCSLMPEVDRLCMVAEMTIS
AAGKLSGYKFYPAVMHSHARLTYTQVADMLEGGEVSDKLKPIFPHLQTLQSLYLTLDETR
AERGAIAFETTETKFVFNADRKIDSIVPSNRNQAHKIIEECMILANVASVKFVKKHKGEV
LYRVHESPSEQKLTNFKDFLKERGLTMEGGLEPTPKDYQAIMEQVADRPDAELIQIMLLR
SMKQATYTPDNEGHFGLALEAYSHFTSPIRRYPDLILHRVIRYLLAKERGEAKEKWTPDG
GYNYQIEELDLLGEECSTTERRADEATRDVSDWLKCEFMRDHVGDTFEAVIASVTHFGMF
VRLDKLFIDGLVHISSLGSDYYQYDNMRQRLVGEASGQTYQLGDSVTVKVAGVNLDDRQI
DLMMAGEEGRSKRPNRGKKPMTARERVNAEGAKLAKADKSDKPKRRGSRSKSGAAKATGE
KSFKTDKSGGAKSSAGKAKSAAKKSKAKKSSTKKSSAKRKAKVSKS
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagatccgcatttaaagcgtgaacaagaaaattacgaaaacccaattcctagc
cgcgagtacattttagattacctgcgctctgaaaaatcaccccttaaccgtgaacgcatt
gccgcagcacttaagcttgaaagtgaagaacacattgaagccttaagacgtcgacttcgt
gcaatggagcgtgacggtgagcttgtctttacccgtggccaagcatatggcctgccagaa
agaatggatctgttaactggaaccatcatagggcataaagatggctttggcttcctcaag
ctagaagaggggggtgatgacctctttattaataaccgtgacatgctgatgtattttcat
ggcgataaggtattggctcagaaagccggtgttgatcgcaaaggacgtcgcgaagccaga
atcgtgcgcttggttcagcaaagagccgctgcattagtgggccgcttccatatggattct
ggcatggcatttgttattgccgatgacaaacgcattactcaagagatattaattcctgat
gaggaccgccttggtgcccgtcagggagatattgttgtacttgaactgactcgtcgccct
ggacgctatgtaaaagctgcgggtaaggtgacagaagtgcttggacaacagatggcgcca
ggtatggagattgagatcgcgctgcgtaactacgatctaccccataaatggtctggtctg
attgagaagaagctgcgtgctattcccgatgaagtgactgaagatgataaaaaaggtcgc
gtcgatcttcgtcaactaccattagttaccatagatggtgaagacgctcgagatttcgat
gatgcggtttacgcggagaagaaaaagagtggcggctggcgtttatgggtggcgattgcc
gatgtgagccattacgttcgcaccgaatctgcactggatagagaagcgcgtagtcgtggt
aactctgtctacttcccatcgcaagtgatcccaatgctgccggagaagatctctaatgga
ctatgttcattaatgccagaagttgatcgtctctgtatggtggccgagatgactatctct
gcagcgggtaaactgtcaggttataagttttatccagcagtgatgcactcacatgcacgc
cttacttacactcaagttgccgatatgcttgagggaggagaggtcagtgacaagcttaag
cctatcttcccgcatctgcagaccttgcaatctctgtacttaaccttagatgagacccgt
gctgagcgtggtgctatcgcctttgaaaccactgagaccaagtttgtctttaatgcagat
cgtaagatagacagcatagtaccgagtaaccgtaaccaagcccataagatcatcgaagag
tgtatgatcttggctaacgttgcctcggtgaagtttgttaagaagcacaaaggcgaagta
ctttaccgtgtacatgaatcgccctctgagcagaagttaactaacttcaaggatttcctt
aaagagcgtggtttgacgatggagggaggcttagagccaactcctaaagactatcaagcg
attatggagcaagttgctgacaggccagatgctgagcttattcagatcatgttgcttcgc
tctatgaagcaggcgacctataccccagataacgaggggcactttggtttagcacttgaa
gcatactcccactttacatcgcctattcgccgttacccggatcttattttacaccgagtg
atccgttatctgctggcgaaagagcgtggagaagccaaagagaagtggacgccagatggt
ggctacaactatcagattgaggagttagatctgttaggcgaagagtgttcaaccactgag
cgccgcgccgatgaagcgactcgtgatgtgagcgactggcttaagtgtgaatttatgcgc
gatcatgttggtgatacgttcgaggctgtcatcgcttccgtgactcactttggcatgttc
gttcgtctcgataagctgtttatcgatggcttagtgcatatctcaagtctaggcagcgat
tactatcaatatgataatatgcgtcagcgccttgtgggcgaggcttcaggccaaacctat
caactgggcgattctgtcacggttaaggtcgcaggcgttaatcttgatgatcgtcaaatt
gatctgatgatggcgggcgaagagggcagatcaaaacgcccaaatcgtggtaagaagccg
atgactgcacgagagcgtgtaaatgccgagggagcaaaactcgccaaggcggataagagt
gataagcctaaacgtcgcggttcgcgctcaaagtctggtgctgctaaagccacgggtgaa
aagagctttaaaacagataaaagcggtggagccaaaagctctgcaggtaaagcaaagtca
gcagctaagaagtcgaaggcgaaaaagtcttcaacgaaaaagagttcggctaagcgcaaa
gctaaagtcagtaagtcgtag
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