Shewanella woodyi: Swoo_4308
Help
Entry
Swoo_4308 CDS
T00676
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
swd
Shewanella woodyi
Pathway
swd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Swoo_4308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swd03019
]
Swoo_4308
03110 Chaperones and folding catalysts [BR:
swd03110
]
Swoo_4308
03029 Mitochondrial biogenesis [BR:
swd03029
]
Swoo_4308
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
swd04147
]
Swoo_4308
Enzymes [BR:
swd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Swoo_4308
Messenger RNA biogenesis [BR:
swd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Swoo_4308
Chaperones and folding catalysts [BR:
swd03110
]
Heat shock proteins
HSP60 / Chaperonin
Swoo_4308
Mitochondrial biogenesis [BR:
swd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Swoo_4308
Exosome [BR:
swd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Swoo_4308
Exosomal proteins of other body fluids (saliva and urine)
Swoo_4308
Exosomal proteins of breast cancer cells
Swoo_4308
Exosomal proteins of colorectal cancer cells
Swoo_4308
Exosomal proteins of bladder cancer cells
Swoo_4308
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ACA88562
UniProt:
B1KIR6
LinkDB
All DBs
Position
complement(5213276..5214928)
Genome browser
AA seq
550 aa
AA seq
DB search
MAAKEVLFGNDARVKMLAGVNVLANAVKVTLGPKGRNVVLDKSFGAPLITKDGVSVAKEI
ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGI
DKAVVAAVAELKNLSQECADTNAIAQVGTISANSDETIGEIIATAMEKVGKEGVITVEEG
QALENELDVVEGMQFDRGYLSPYFINKPETGSVELESPFILLVDKKVSNIRELLPILEGL
AKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTV
IAEEIGLELEKATLEDLGTAKRVIITKDDTTIIDGTGEQDQIQARVAQIKVQAEESTSDY
DKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALV
RVASKIADVEVINEDQKHGVVIALRAMEAPLRQIATNAGEESSVVANNVKNGSGNYGYNA
GNDTYGDMLEMGILDPTKVTRSALQFAASIAGLMITTEAMVGEVPQEAAGAPDMGGMGGM
GGMGGMGGMM
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaagaagtattatttggtaatgacgctcgcgtaaaaatgcttgcaggcgtt
aacgtactagcaaacgcagttaaagtaactctaggcccaaaaggtcgtaacgtagtacta
gacaagagcttcggtgctccactaatcactaaagatggtgtttctgttgctaaagagatc
gaacttgaagacaagttcgagaacatgggtgcacagatggtgaaagaagttgcttctaaa
gccaacgatgctgctggtgacggcaccactaccgcaactgtacttgctcaagcaatcgtt
accgaaggcttaaaagccgttgcagctggcatgaacccaatggatcttaagcgcggtatt
gacaaagcagttgttgctgctgttgccgagcttaaaaacctatctcaagagtgtgcagac
actaatgctatcgctcaggttggtactatctcagctaactcagatgagactatcggcgaa
atcatcgcaacagcgatggagaaagtgggtaaagagggcgttatcacagttgaagaaggt
caagcactagagaacgagctagacgtcgttgaaggtatgcagtttgatcgtggttaccta
tctccatacttcatcaacaagcctgagactggcagtgttgagctagaaagcccattcatc
ctacttgttgataagaaagtatcaaacatccgtgaattgctaccaatccttgaaggttta
gctaaaacaggtaagccactgcttatcgttgctgaagacgttgaaggcgaagcactagca
acactggttgtgaacaacatgcgtggtatcgttaaagttgccgctgttaaagctcctggt
tttggcgatcgtcgcaaagcgatgctacaagatatcgctatcttaactggcggtactgtt
atcgctgaagagattggcctagagcttgaaaaagcgaccctagaagacctaggtacagct
aagcgcgttatcatcactaaagatgacactactatcatcgacggtactggtgagcaagat
cagatccaagcacgtgttgcacagattaaagtacaagctgaagaatcaacctctgattat
gacaaagagaagcttcaagagcgtatggctaaacttgcaggcggcgtagccgtgatcaaa
gttggcgcagcgactgaagttgaaatgaaagagaagaaagctcgcgtagaagatgcacta
cacgcgacacgcgctgctgttgaagagggcgtagttgctggtggtggtgttgcactagta
cgcgtagcaagcaaaatcgctgacgttgaagttatcaacgaagatcaaaagcacggtgtg
gttatcgcactgcgcgcgatggaagcgccactacgtcaaatcgcaaccaacgcaggtgaa
gagagttcagttgttgctaacaacgtcaagaacggctctggtaactacggttataacgct
ggtaacgacacatatggtgacatgctagagatgggtatcctagacccaactaaagtaacc
cgtagcgcgctacagttcgcagcgtctattgcaggtttgatgatcactaccgaagcaatg
gttggtgaagtaccacaagaagctgctggtgcgcctgatatgggcggcatgggtggaatg
ggtggtatgggcggaatgggcggcatgatgtaa
DBGET
integrated database retrieval system
