Shewanella woodyi: Swoo_4552
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Entry
Swoo_4552 CDS
T00676
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
swd
Shewanella woodyi
Pathway
swd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Swoo_4552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swd03019
]
Swoo_4552
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_4552
Enzymes [BR:
swd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Swoo_4552
Messenger RNA biogenesis [BR:
swd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Swoo_4552
DNA repair and recombination proteins [BR:
swd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Swoo_4552
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
HEM4
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ACA88802
UniProt:
B1KKZ6
LinkDB
All DBs
Position
complement(5519977..5521803)
Genome browser
AA seq
608 aa
AA seq
DB search
MEQVIDQTQLDPLSLSLQSVFGYRTFRDGQKEVIEQSCSGYDCLVIMPTGGGKSLCYQLP
ALQLPGLTLVVSPLISLMKDQVDSLIQMGVSAAYLNSSQPREESARILQQMHSGELKLLY
VSPERLLQGHFIDRLHELNLSLFAIDEAHCISQWGHDFRPEYAALGKLREVFPHVPIMAL
TATADQATRKDICDRLTITPYSLLTSFDRPNIRYTVAEKLNAANQLRQFVAAQNGNSGII
YCSSRRRVDEVAERLRLQGHNAEAYHAGKTQEERADVQDRFLKDQLDIVVATVAFGMGIN
KSNVRYVVHYDIPKSVESYYQETGRAGRDGLESEALLLFDPADIGRVRHLIEQSEPGPQQ
QVEFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKKYNGIQDAQKVLS
CIYRLDQRFGINHLIEVLRGSKAATVLERGHDKLSTWGIGKDKSHEYWLSIIRQIIHLGF
ASQDITRGSSVKLNPSARSVLKGEVELLLAEPRMVLQSTTKRRGSSTRAPLNYDRKLFAR
LKQLRRKLAEELDVPPYLVFNDATLAEMAAILPTSPGEMLAVNGVGERKLTRFGDEFLDE
ISNYLTNS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagtgatagaccaaactcaattagatccgctttcattaagtctgcagtctgtt
ttcggctaccggacattcagagatgggcagaaagaggtgatagagcagagttgttcgggc
tatgactgtttggtgatcatgcccactggtggggggaagagtctctgttatcaattgcca
gctttgcagttgccagggttaacccttgtggtgtctccgcttatatccttgatgaaagat
caagtggatagcttgatccagatgggagtgagcgcggcttatctgaactcctcacagcca
agagaggagagtgctaggattttacaacagatgcacagtggtgagcttaaactgctctat
gtatcgccagagcgtttgttacagggacattttatcgataggcttcatgaactgaacctc
tccctttttgctatcgatgaagcacactgtatatcacagtggggccatgactttagacct
gaatatgccgccttgggtaagctcagagaagtttttccacatgtacctattatggcgcta
acagcgactgcagatcaggcaacccgaaaagatatctgtgacaggctaaccattacccca
tattcattattaaccagctttgatcgccccaatattcgctatacggtggcggaaaagctc
aatgctgctaaccagctgcgccagtttgttgcagcgcaaaacggtaatagtggcattatc
tattgcagtagccgtcgacgtgtcgatgaggtggctgaacgccttagacttcaaggtcat
aatgccgaggcttatcatgctggcaaaacccaagaggagcgggctgatgttcaggatcga
ttcctgaaagatcaactcgatattgtggtggcgaccgtcgcttttggtatggggatcaat
aaatcgaatgtgcgttatgttgtgcattacgatattcctaaaagtgttgagtcttactat
caggagactggtcgagctggacgagatggattggagtctgaggcgctactgctgtttgat
ccagccgatattggccgagtacgccatcttatcgagcaatcagaaccaggtcctcagcag
caggtcgagtttcataaacttaataccatggcggcatttgccgaggcacaaacctgccgg
cgtcaggtgttactgcactattttgatgagagtgccctagagccttgtggcaactgtgat
atctgcttggatccaccgaaaaagtacaatggtattcaagatgctcagaaggtgttgtcc
tgtatctatcgcttagatcaacgttttggtattaaccacctgattgaggtacttagaggg
tctaaagctgcaactgtgttggagcgaggtcatgataaattatcaacttggggaattggc
aaagataagagccatgagtattggttgagtatcatacgccagatcattcatcttggtttt
gccagtcaggatattacccgtggttcctctgtgaaactgaatccatcggcgcgttcggtg
ttaaagggtgaggtggagttattgcttgcagagccaagaatggtactgcaaagcaccact
aagcgtcgaggtagtagtacacgagcaccacttaattacgatcgtaaactgtttgctcgc
cttaagcagttaagacgcaaactggctgaagagttagatgtgccaccctatctggtattt
aacgatgccactttagctgaaatggcggccatactgcctacaagtcctggggagatgttg
gccgtaaacggagttggcgagcgtaagttgacccgttttggagatgagtttcttgatgag
ataagcaactatttaaccaatagttag
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