Shewanella woodyi: Swoo_4696
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Entry
Swoo_4696 CDS
T00676
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
swd
Shewanella woodyi
Pathway
swd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Swoo_4696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
swd03021
]
Swoo_4696
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_4696
Enzymes [BR:
swd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Swoo_4696
Transcription machinery [BR:
swd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Swoo_4696
DNA repair and recombination proteins [BR:
swd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Swoo_4696
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ACA88946
UniProt:
B1KMY9
LinkDB
All DBs
Position
complement(5661460..5665677)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIDMMREELPSINSETRRKKITKRLKLIEAFFQSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVPEVWDVLDDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECVNGKGEGMAFESIDEVEKAYRTK
VAAIHARIKVRVTETQIAENGERTESRRIVDTTVGRALLSRILPKGLSYDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYAGFHYATVSGASVGINDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMANLSSETVINRDGEEEEQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVSQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEEDCGTFEGLTMKPLIEGGDVVEPLRERVL
GRVVAQDVLKPGTEEVLVPRNTLLDEAWCDIVEENSIDEMIVRSVISCDTDFGVCAACYG
RDLARGHIINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNLGTLKL
HNAKYVTNSVGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEDDAVAAGEIIANW
DPHTHPIVSEVAGSIKFVDMIEGVTMTRQTDELTGLSSIVVMEVGQRPSAGKEMRPAICL
IGADGNDLMIPGTEVPAQYFLPGNAIVAQDDNAPINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEHSGTISFGKETKGKRRLVITPADGGDHYEEMIPKWRNLNVFE
GEKVERGEVIADGAEAAHDILRLRGIHKVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCEITNAGDSEFLAGEQAEVSRVKIANRELEAQGKQPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDKLRGLKENVIVGRLIPAGTGYSYHQKRNAETATGTDTE
AAPVISASEAEQNLADLLNLAGSSD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagaccgaagagtttaacggcatt
aagatcggactagcgtcgccagatctaatccgctcttggtcatttggtgaagttaagaag
ccagaaaccattaactaccgtacctttaagcctgagcgtgaaggcttattctgtgcgcgt
atttttggtccagtaaaagattacgaatgtttatgcggtaagtataaacgtcttaagcac
cgtggtgtgatctgtgaaaagtgtggcgttgaagttacacagactaaagtacgtcgtgag
cgtatgggtcacatcgatctcgctagcccagttgcacacatttggttcttgaagtcgctt
ccgtctcgtatcggtttgatgctagacatgacacttcgtgatattgaacgtgtactttac
ttcgaatctttcgttgtaatcgagcctggcatgaccagtcttgaacgtggccaaatgcta
acagaagaaaactatctggatgcattggaagagtacggtgatgagtttgaagctaagatg
ggtgctgaagcagttctagaattgctacgtgctatcgatcttgaaaaagagattgatatg
atgcgcgaagagttgccatcaattaactctgagactcgtcgtaagaagatcactaagcgt
cttaagcttattgaggcattcttccagtcaggtaacaagcctgagtggatgatccttaaa
gtgctaccggttctgccaccagatctacgtcctctagtaccactagacggcggacgtttt
gctacctctgatcttaacgacctttaccgtcgtgtgatcaaccgtaacaatcgtctaaag
cgtctgttagacctagctgctccagacatcatcgtacgtaacgaaaagcgtatgttgcaa
gagtctgttgatgccctgctagataacggtcgtcgtggtcgtgctattacgggttctaac
aagcgtccgcttaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacctactaggtaagcgtgtggattactctggtcgttcggtaattaccgtaggtccaaca
cttcgcttacatcagtgtggtcttcctaagaagatggcacttgagctatttaagcctttc
atctatggcaagctagaaggccgtggtttagcgactacgatcaaagctgctaagaagatg
gtagagcgtgaagttcctgaagtttgggatgttctagatgatgtgattcgtgaacaccca
gtgatgcttaaccgtgcaccaacgctgcacagactaggtatccaggcatttgagccagta
ttgattgaaggtaaagcaattcagcttcatcctttggtttgtgcggcatacaacgccgac
ttcgatggtgaccaaatggctgttcacgtgccgctaacgctggaagctcagctagaagca
cgttcgcttatgatgtctaccaacaacatcctatcaccagcaaacggtgagccggttatc
acaccgtcacaggacgttgtattgggtctgtactacaccagccgtgaatgtgtaaacggt
aaaggtgaaggtatggcgtttgagtctatcgacgaagtcgagaaggcttaccgtactaaa
gttgctgctatccatgctcgcattaaagtacgtgtaacagagactcaaattgctgagaac
ggtgagcgcactgaatcacgtcgtatcgttgatactacggttggtcgtgcactgctttct
cgcattttgccgaaaggtctatcttatgatctggttaaccagaacatgggtaagaagcag
atctctaagctattgaacacttgttatcgtcaactaggtcttaaagatactgttatcttt
gctgaccaattgatgtatgccggtttccactatgcaactgtgtcgggtgcctctgtaggt
atcaacgatatggttattccagatgagaagtacacgctagttgctgacgctgaagcggaa
gttcttgaaattcaagagcagttccaatcaggtctagtaacagctggtgagcgttacaac
aaggtcatcgatatctgggcaagtgcgaacgagaaagtttctaaagcgatgatggctaac
ctgtcttcagagacagtgattaaccgtgatggtgaagaggaagagcaagagtcgtttaac
agcatctatatgatggctgactcgggcgctcgtggtagtgctgcacagattcgtcagttg
gcgggtatgcgtggtctgatggctaagccggatggctctatcatcgagactccgatcaca
gctaacttccgtgaaggtctgaacgtatctcaatactttatctctactcacggtgctcgt
aagggtctagcggatacggcacttaagacggctaactctggttacctaactcgtcgttta
gtagacgttgcacaagatttagttgtcatcgaagaagattgtggcacgttcgaaggtctg
acaatgaaaccacttattgaaggtggtgatgttgttgagccgttacgtgaacgcgttctt
ggtcgtgttgttgctcaagatgtacttaagcctggtactgaagaagtacttgtgccacgc
aatacactgcttgacgaagcatggtgtgacatcgtcgaagagaactctatcgatgagatg
atcgttcgctcagtaattagctgtgatacagacttcggtgtgtgtgctgcctgttacggt
cgtgacttggctcgtggccatatcatcaaccaaggtgaagctattggtgttgttgctgct
cagtcaattggtgagcctggtacacagcttacgatgcgtaccttccacattggtggtgct
gcatctcgagcgtcagctgagaacaatgttcaagttaagaaccttggtactcttaagctg
cacaatgctaagtacgttacaaacagcgtaggcaagttggttatcgtttctcgttcttca
gagcttgcgattatcgatgagcttggtcgtgagaaagagcgttataaggttccttacggt
actgtacttgagaagttggaagatgatgctgttgcagctggcgaaattatcgctaactgg
gatccgcatactcacccaatcgtttctgaagtagcaggtagtatcaagttcgttgatatg
attgaaggtgtcactatgacacgtcaaacagatgagctaactggtctatcttctatcgtg
gtaatggaagtgggtcaacgcccaagtgcgggtaaagagatgcgtcctgcgatctgtcta
atcggtgccgatggcaacgatctgatgatccctggaactgaagttcctgcgcaatacttc
ttacctggtaacgcgattgttgctcaagacgataacgcaccaattaacgttggtgacgcg
ctagcgcgtattccacaagaatcgtctaagactcgtgatattaccggtggtctacctcgc
gtagccgacttgtttgaagcgcgtaagcctaaagagcctgcaattcttgctgagcactca
ggtacaatctcgttcggtaaagagactaagggtaaacgtcgtctagttatcacaccagct
gatggtggtgatcactatgaagagatgatccctaagtggcgtaacctaaacgtgttcgaa
ggtgagaaagtcgaacgtggtgaggttattgctgatggtgctgaagctgcacatgatatt
ctacgtctacgtggtattcataaagtagctaactacatcgttaatgaagttcaggacgta
taccgtctacagggcgtaaagattaacgataagcacatcgaagttatcattcgtcaaatg
ctgcgtaagtgtgagatcaccaacgcaggtgacagtgagttcctagcaggtgagcaagct
gaagtatcacgtgtgaagatcgctaaccgcgaacttgaagcacaaggtaagcagccagca
accttcgagcgtgagcttcttggtattaccaaggcgtctctagctactgagtcatttatc
tcagcagcatcgttccaggaaaccacacgcgtactgacagaagcggcagtaggcggtaag
agtgataagctacgcggtcttaaagagaacgtgatcgtgggtcgtctgatccctgctggt
acgggttactcataccatcagaagcgtaacgctgaaactgcaacaggtacagataccgaa
gcagcaccagttattagcgcgagtgaagcagagcagaaccttgccgatctactcaatcta
gctggaagttctgattaa
DBGET
integrated database retrieval system
