Shewanella woodyi: Swoo_4697
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Entry
Swoo_4697 CDS
T00676
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
swd
Shewanella woodyi
Pathway
swd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
swd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Swoo_4697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
swd03021
]
Swoo_4697
03400 DNA repair and recombination proteins [BR:
swd03400
]
Swoo_4697
Enzymes [BR:
swd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Swoo_4697
Transcription machinery [BR:
swd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Swoo_4697
DNA repair and recombination proteins [BR:
swd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Swoo_4697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
ACA88947
UniProt:
B1KMZ0
LinkDB
All DBs
Position
complement(5665759..5669790)
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGFEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAPGTVKDIKEQ
EVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLAASIILRALDYSTQDILDLFFDRVNFKIKKDSLVMD
LVAERLRGETASYDIKDVEGTIIVEKGRRITARHIRQLEKSNTTELEVPVDYIVGKISGQ
DYIDPDTGEVLVSANAEMTLEDLAKLSLAGIKEISTLYINELDNGAYMSDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLGIDDDEGTGI
LSKEDIVAVMKNIITIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVIDGVV
TDQVDYLSAIEEGRYVIAQAIVDLDENGRMMDELIACRHKGDSTFMGAADIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERTLAVDSGVVVVAK
RGGYIDYVDASRIVVKVNESELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCAMGDPVVT
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHVRQAKKD
LTEEFQILEEGVYGRARNLLLSAGFNEAQLDAIPRSQLLSQSIDDEGKQTELEQLAEQHD
ELKADFDKKFEVKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGNPIDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGDKIAAMLEEQRELA
ELRGYIKEVYELGEEVQQRVDIDSFTDDEVVRLAKNLKGGIPTATPAFDGAKEKEIKEML
ALAGLPTTGQRKLFDGRTGDEFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTNMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQD
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagattttggtaaacgtccacag
gttttggatattccttatcttttgtctatacagttggactcatttaaaaagttcaccgat
caagatcctacaggtgagcgtggttttgaagccgctttccgtagcgtttttcccatcaaa
agtttttctggtaactcagaattacagtacgttagctataagctaggcgaacctgttttt
gatgtgaaagagtgtcaaatccgcggcgtaacttactctgcaccattgcgcgttaaattg
cgtatggttctgtatgaccgtgaagcagcacctggcacagtcaaagacattaaagagcaa
gaagtctacatgggggatatccctctgatgactgaaaacggtacctttgttatcaatggt
actgagcgtgttatcgtttctcagctacaccgttcacctggtgtattctttgatcatgac
cgcggcaagacccactcttcaggtaaggtgctttataacgcacgtattattccttaccgt
ggttcttggttagatttcgaattcgatcctaaagatgcactatttgtacgtattgaccgt
cgtcgtaaacttgcggcttcaatcatcctacgtgcactagactactctactcaggatatt
ttggatctgttcttcgatcgcgttaactttaagatcaagaaagattcattagtgatggac
cttgttgcagagcgcctacgtggtgaaactgccagctacgacattaaagatgttgaaggt
actatcatcgttgagaaaggacgtcgtattactgcacgtcatattcgtcaacttgagaag
agcaataccactgagcttgaagtgccagtagattacatcgttggtaagatttcaggtcaa
gactatattgatcctgatactggcgaagtattggtttctgctaacgcagagatgacactt
gaagatcttgctaagctttctttggctggtatcaaagagataagcacactgtatatcaac
gagcttgataatggtgcttatatgtcagatacattgcgtattgattctacaactaaccgc
cttgaagcgttggttgagatctaccgtatgatgcgtcctggcgagccaccaaccaaagat
gctgcagaagcgttattccagaacttgttcttcagtgaagagcgttatgatctatctaaa
gtaggtcgtatgaagttcaaccgtcgtctcggtatcgatgatgacgaaggtactggcatt
ctatctaaagaagatatcgttgctgtaatgaagaacatcatcactatccgtaatggtaat
gatgaagttgatgatatcgatcacttgggtaaccgtcgtatccgtagtgttggtgaaatg
gctgaaaaccagttccgtgttggtctagttcgtgtagaacgtgccgtacgtgagcgttta
agccttggtgatcttaatgagctaatgccacaagatcttatcaacgctaagccaatctct
gcagcagttaaagagttcttcggttcttctcagctgtctcagtttatggatcagaacaac
ccactttcagaagtgacacataagcgccgtatttcggctcttggtccaggtggtttgacc
cgtgaacgtgctggttttgaagttcgagatgtacacccaactcactacggtcgtttatgt
ccaattgagacccctgaaggtccaaacattggtctaattaactcgttagcaagttttgcg
cgtactaactcttatggtttccttgaaacaccttaccgtaaggttattgatggtgtggtt
actgatcaggtcgattacctatcagcaatcgaagagggccgttacgttattgcacaggct
atcgtcgacttagacgaaaatggccgcatgatggatgagcttatcgcttgtcgtcataaa
ggtgattcaacctttatgggtgctgcagatatccaatatatggatgtatcgccacagcag
atcatttcagttgcagcatcacttattccgttcctagaacacgatgatgctaaccgcgcc
ttgatgggtgcgaacatgcaacgtcaggctgtaccaacactaaaggctgataagccacta
gtaggtacaggtattgagcgtacacttgctgttgattctggtgttgttgtcgttgctaag
cgtggcggttacatcgactatgttgatgcaagtcgtatcgttgttaaggttaacgaatct
gagctacgtccaggcgaagctggtatcgatatctacaacttgactaagtacacgcgttct
aaccagaacacctgtattaaccaacgtccttgttgtgcgatgggcgatccagttgtgact
ggtgacgttcttgctgatggtccatctaccgatttgggtgatttggctcttggtcagaac
atgcgtatcgcgttcatgccttggaacggttacaactttgaggattcgatccttatttct
gagcgtgtagctcaagaagatcgtttcaccactatccacattcaagagctttcatgtatc
gctcgtgatactaagttgggtagtgaagagatcacagctgatattccaaacgttggtgaa
tctgcgctttctaagctagatgaatcaggtatcgtttatatcggtgctgaagttaagggt
ggcgacattctggttggtaaggtgacacctaagggtgaaactcagctgactccagaagag
aagcttctccgtgctatcttcggtgagaaggcctctgatgttaaagacagctctctacgc
gtacctaactctgttaaaggtactatcattgacgttcaggtatttacccgtgacggcgtt
gagaaagataagcgtgctgttgaaattgaagagatgcatgttcgtcaagctaagaaagac
ttgactgaagagttccagatcctcgaagagggtgtttatggacgtgcacgtaaccttcta
ctgagtgctggcttcaacgaagctcaattggatgctattccacgttcacaactgctttct
caaagcattgatgacgaaggtaagcagactgaactagagcagcttgctgagcagcatgac
gagcttaaagctgacttcgataagaagtttgaagttaagcgtcgcaagatcactcaaggt
gatgacttagcacctggcgtacttaagattgttaaggtttacctagcagttaagcgtaca
atccagcctggtgataagatggcgggtcgtcatggtaacaagggtgttatctctaagatt
aaccctgttgaagatatgccttacgatgagaatggtaacccaatcgacatcgtactgaac
ccacttggtgtaccatcgcgtatgaacatcggtcaggttcttgaggtgcatcttggcgca
gcagctaaaggtatcggtgataagatcgctgcaatgcttgaagaacagcgtgaacttgct
gaacttcgtggctacatcaaagaagtttatgagttaggtgaagaggtgcagcagcgcgtc
gatatcgattcatttactgatgatgaagtggttcgtcttgctaagaaccttaaaggtggt
atcccgactgcgactccagcattcgatggcgcgaaagagaaagagatcaaggagatgcta
gcattagctggtcttcctactactggtcagcgcaaattgtttgatggtcgtaccggtgat
gagtttgagcgtcaggtaactgttggttacatgtacatgctaaaacttaaccacttggtt
gatgataagatgcatgctcgttctacgggttcttacagtcttgttactcagcagccattg
ggtggtaaagctcagtttggtggtcagcgtttcggtgagatggaagtttgggcactagaa
gcatacggtgccgcttatacgcttcaagagatgctaactgttaagtctgatgatgttaac
ggtcgtaccaatatgtataagaatattgtcgacggtaaccaccagatgcaaccaggcatg
ccagagtctttcaacgtattgttgaaggagatccgttcactcggtattaatatcgagttg
gatcaagactaa
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integrated database retrieval system
