| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
swf Formicincola oecophyllae
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:swf00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E3E12_01940 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:swf03021]
E3E12_01940 (rpoC)
03400 DNA repair and recombination proteins [BR:swf03400]
E3E12_01940 (rpoC)
Enzymes [BR:swf01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E3E12_01940 (rpoC)
Transcription machinery [BR:swf03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E3E12_01940 (rpoC)
DNA repair and recombination proteins [BR:swf03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E3E12_01940 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(434932..439257)
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| AA seq |
1441 aa
MSELTKILGQTGQVGNFDRIRIQLASSDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKFRGIVCEKCGVEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIATMLDLPLKDVEPVLYFEKFLVLDKGIADADIESFKVAKKRDQYLLDEVRAEEILE
EYPDAGIEIGIGAEAIKKALASYDWGVPNAEEREISAAARAKGEPDPFDYDVEILDADSE
KTILRKKLRKATSEAARKKLVKRLKMVEAFVESGSKPEWMIMDVVPVIPPELRPLVPLDG
GRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRMLQEAVDALFDNGRRGRAIT
GANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGPELKLHQCGLPKKMALELF
KPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREHPVMLNRAPTLHRLGIQAF
EPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPANGK
PIIVPSQDIVLGLYYLSLQTPEYDATPDAPEVSADGKVVKPGPRAFGSIAEIEAALAAGT
LKVHDKIRFRLERLDADGKMERQTVITSPGRAMVAQILPQNAAIPFSLVNQQLTKKAISS
IIDAVYRHCGQKEAVIFCDQLMALGFKNAAVAGISFGKDDMIVPAEKATLVEHTANEVRE
FEQQYQEGLITAGERYNKVVDAWSRCTDEVQAAMLKELSKQTIGKPTNAVWMMAHSGARG
SPAQMKQLAGMRGLMVKPSGEIIEQPIIANFKEGLSVLDYFTSSHGARKGLADTALKTAN
SGYLTRRLVDVAQDCIITALDCGTENGLTVRAVTDSGEVVASLGERILGRTLSKPINKPG
TDEVLLPANHLVTEADVEVLEEAGVESADIRSVLTCESKVGICAACYGRDLARGTPVNIG
EAVGVIAAQSIGEPGTQLTMRTFHIGGTATKGAEQSMVEAMRDGTITIKNRNVVVNSANV
PVVMSRNCEIILSDENGVERGRYRVPYGARLMVNDGQKVERGQKMAEWDPYTLPIITEQS
GKVEYQDLIEGVTLAEKMDEVTGLTSRIIIDNKGVAKGVDLRPRLQLQGPDGKLVHLANG
NEARYFLSPDSILSVDNGAEVHAGDVLARIPREGGKTRDITGGLPRVAELFEARRPKDHA
IIAEGPGRIEFGKDYKAKRCIIVKNDETGEQTDYLIPKGKHISVQEGDYVQKGDPLVDGP
RVPHDILKVMGVEALSDYLVNEIQDVYRLQGVKINDKHIEVIVRQMLQKVEVLEPGDSTW
LIGETVDRVEFEGVNRELEAAGRTMAKAMPILQGITKASLQTQSFISAASFQETTRVLTE
AASSGKVDTLGGLKENVIVGRLIPAGTGGAMRRLQQIADADSHPAVENAHTKVIDAVSTE
N |
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| NT seq |
4326 nt +upstreamnt +downstreamnt
atgagcgaacttacgaaaatccttggccagaccggccaagttggcaattttgaccgcatc
cggatccagcttgcttcaagcgaccagatccgttcctggtccttcggtgaagtcaagaaa
cccgaaaccattaactaccgcaccttcaagccagagcgtgacggcctgttctgcgcgcgc
atttttggtcccgtgaaggattacgaatgcctttgcggcaagtataaacgcatgaagttc
cgtggcatcgtctgcgagaaatgcggcgttgaagtcaccttggccaaagtgcgccgcgaa
cgcatgggccatatcgacttggccagtccggttgcccacatctggttcctgaagtcgctg
ccctcacgtattgctacgatgcttgacttgccgctcaaggatgtggagccagtcctttat
tttgagaagttcctggttctcgacaagggcatcgctgacgctgacatcgaatccttcaag
gtggccaagaagcgcgaccagtacctgcttgatgaggtgcgcgctgaggagatccttgag
gaataccctgatgctggcatcgagatcggcattggggcagaggccatcaagaaggccctg
gccagctatgactggggtgtgcccaacgctgaggaacgcgaaatcagcgctgccgcgcgc
gccaagggcgagccagatcccttcgattacgatgttgagatcctcgacgctgattcagag
aagaccatcctgcgcaagaaactgcgcaaggccacctctgaagcagcccgcaagaagttg
gtcaagcgcctcaagatggttgaggccttcgttgaaagtggctccaagccagagtggatg
atcatggacgtggtgccggtcatcccgcctgagctgcgtccattggtgccgcttgacggc
gggcgtttcgccacatctgacctcaacgacctttaccgccgcgtcatcaaccgcaacaac
cgcctcaagcgcttgatggagctgcgcgcgcctgacatcatcgtgcgcaatgaaaagcgt
atgctgcaggaagctgtcgacgctctctttgacaatggccgccgtgggcgcgccatcaca
ggcgctaacaagcgccccctgaaatccctttcagacatgctgaaaggcaagcaggggcgt
ttccgtcagaacctgcttggcaagcgcgttgactattcaggccgttccgtcatcaccgtg
gggccggagctgaagctgcatcagtgtggcttgcctaagaagatggcgttggaactgttc
aagcccttcatctattcaaagcttgagaaatatggccacgccaccaccattaaggctgcc
aagcgcatggtggagaaggagcgcccagaggtttgggacatcctggaagaggtcatccgc
gagcatcccgtgatgctgaaccgtgcccctaccctgcacaggcttggcatccaggcgttt
gagcctgtcttgattgaaggcaaagccattcagcttcacccattggtgtgcactgccttc
aatgcggactttgacggtgaccagatggccgtccatgtgcccctttcgctggaagcccag
cttgaggcacgcgtgctgatgatgtccaccaacaacgtccttagccctgctaacggcaag
cccatcatcgtgccttctcaggacatcgtgctgggtctctattacctcagcctgcagacg
cctgaatatgacgccacgccagacgccccagaagtgagcgctgacggcaaggtcgtcaag
cctggtccgcgcgccttcggttccattgctgaaatcgaggccgctttggctgcaggcacc
ttgaaggtgcatgataaaatccgcttccgcctggaacgcctggacgctgatggcaaaatg
gaacgccaaaccgtcatcacctccccaggtcgtgccatggtggcgcagattctgccgcag
aatgctgccatccccttcagcctggttaaccagcagctgaccaagaaagccatttcctcc
atcattgacgctgtctaccgtcattgtgggcagaaggaagcggtcatcttctgcgatcag
ctcatggcgcttggcttcaaaaacgccgctgtcgccggcatctccttcggcaaggacgac
atgatcgttccagctgagaaggctaccttggttgaacacaccgccaacgaggtgcgcgag
ttcgagcagcagtaccaggaaggcctcatcaccgctggtgagcgctacaacaaggttgtg
gacgcctggtcacgctgcacggatgaagtgcaggccgccatgctcaaggagctttccaag
cagaccattggcaagcccaccaatgccgtgtggatgatggcccactccggcgcccgtggg
tcgcccgcccagatgaagcagctggctggcatgcgtggcctgatggtgaagccttctggc
gagatcatcgagcagcccattatcgccaacttcaaagagggcctctccgtcctcgattac
ttcacctccagccatggcgcccgtaaaggcctggctgacacggccctcaagaccgccaac
tccggttatctgacgcgccgtttggtcgacgttgcccaggactgcatcatcacagctctt
gactgcggaacggaaaatggcctcacagtccgcgccgtcactgacagtggtgaggttgtc
gcctccctgggtgagcgcattctgggccgcacattgtccaaacccatcaacaagcctggc
acggatgaagtcctcctccccgccaaccatctcgtgacggaagcagatgtggaggttctg
gaggaagcgggggtggaaagcgctgacatccgctctgtcctgacatgtgaaagcaaggtt
ggcatttgcgccgcttgctatggccgtgacctggcgcgtggtacgcctgtcaacattggc
gaggccgtgggcgtcattgccgctcagtctattggcgagcctggcacgcagctgactatg
cgcaccttccacattggcggcactgctaccaagggggcggagcagtccatggtggaggcc
atgcgtgacggcaccatcaccatcaagaaccgcaatgtggtggtgaactcagccaacgtg
cctgtggtcatgtcacgcaactgcgagatcatcctctctgacgagaatggcgtggagcgt
ggccgctaccgtgtgccttatggtgctcgcctcatggtcaatgatgggcagaaggttgag
cgcggccagaaaatggctgaatgggacccctacaccctgcccatcatcacggagcagtcc
ggcaaggtggaataccaggacctcattgaaggtgtgaccttggctgagaagatggatgaa
gtcacaggcctgacgtcacgcatcatcattgacaacaaaggtgttgctaagggcgttgac
ctgcgtccccgcctgcagctccagggcccagatggcaagctcgttcatctcgccaatggc
aatgaagcccgctacttcctttcccctgattctatcctttcggtggataatggggcggaa
gttcatgctggtgacgtattggcgcgcattccgcgtgaaggtggcaaaacacgcgacatc
actggtggtctgccacgtgtggctgagctgtttgaagcgcgccgtcccaaggaccatgcc
atcatcgctgaagggcctgggcgcatcgagtttggcaaggactacaaggcaaaacgctgc
atcatcgtcaaaaatgacgaaacaggcgaacagacggattaccttatcccgaaaggtaag
cacatctccgttcaggagggggattacgtccaaaaaggcgatccgttggtcgatgggccg
cgtgttccccatgacatccttaaagtcatgggcgtggaagccctctccgactacctcgtc
aacgagatccaggatgtttaccgcctgcagggcgtgaagattaacgacaagcacattgaa
gtgatcgttcgccagatgctgcagaaagttgaggttctggaaccaggtgattccacttgg
ctcatcggcgagaccgttgatcgtgtggagttcgagggtgtcaacagggagctggaggct
gcagggcgtacaatggctaaggccatgcctatcctgcagggcattaccaaggcttccttg
caaactcagtccttcatctcagctgcttccttccaggaaaccacacgtgtccttacggaa
gctgcgagctctggcaaggtcgataccctgggtgggttgaaggagaatgtcattgtcggg
cgcctcattccagccggcactggtggggccatgcgccgtctgcagcaaattgctgacgca
gactcacaccctgctgtggaaaacgcccacaccaaggtgattgacgctgtctctacagaa
aactga |
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