Formicincola oecophyllae: E3E12_03415
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Entry
E3E12_03415 CDS
T06093
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
swf
Formicincola oecophyllae
Pathway
swf03410
Base excision repair
swf03430
Mismatch repair
swf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
swf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
E3E12_03415 (recJ)
03430 Mismatch repair
E3E12_03415 (recJ)
03440 Homologous recombination
E3E12_03415 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swf03400
]
E3E12_03415 (recJ)
DNA repair and recombination proteins [BR:
swf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
E3E12_03415 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
E3E12_03415 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E3E12_03415 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
QDH13408
UniProt:
A0A4Y6UA00
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All DBs
Position
786117..787976
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AA seq
619 aa
AA seq
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MTVDQTPVLGINCSSTERQWRWRSPLLAGPALGLGHPEALSVTTMAEQHDLSLITARLLA
ERGLNSQTIKAHLAPRLKDSMPDPSLLADMNRAAERLADAVMAGEVIGVFGDYDVDGACG
SALLVSTLRALGVKVHSHIPDRMKEGYGPNEPAIRALGAQGAGLVLCVDCGIAAMDVLDP
ISGDEHAPDIIVLDHHKPALDEKGVQKLPLAITVNPNRQDCPSGLGHVCATTVAFLAMVA
LVRTLRQRGWFKLGERAEPNLINLLDVVALATICDVMPLRGFNRALVKQGIAVLGRGERV
GLRALSTVAGVRESTSAMACGFALGPRINAGGRIGNAGLGLKLLLSDDEGEASAIAAELN
SVNVKRRQVEQAILEEAMRQGEEQMAAGHAALFVHGRDWHPGVVGIVAGRLKERFNRPTL
VGGLVVGEGGEEIIKGSARSIDGLDIGAAILKASAAGAILGGGGHAMAAGFALGPAQVEG
FHKLLDEELAAACQLPARPPLYVDGCLSLHGANRNLALELEALAPFGPGNPQPVLVLENV
RCRYVKRIGKDSNTLMLTFEDESGTATLKALAFRAGDKAFTPLLEDSSRPLLHVAGTLQR
DDWQERKSVAFFIEDVARA
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacggttgaccaaacaccagtgctgggcatcaactgcagcagcacggaacgacagtgg
cgctggcgcagcccccttctggctggccccgctctgggccttgggcaccctgaggctctg
tctgtcaccaccatggccgaacagcatgacctgtccctcatcacggcgcggcttttggct
gaacgtgggctcaacagccaaaccatcaaggcgcaccttgcaccccgcctgaaggactcc
atgcccgacccttccctgttggctgacatgaacagggcggctgaacgtctggctgacgcc
gttatggctggggaggtcattggggtttttggtgattacgatgtggacggcgcctgtggt
agcgcccttctggtcagcacgttgcgtgctttgggggttaaggtccacagccatattcca
gaccgcatgaaggaaggttacggccccaatgaacctgccatccgcgcccttggcgcccaa
ggcgctgggcttgtgctgtgcgtggactgcggcattgcagccatggatgtccttgacccc
atcagcggtgatgagcacgcccctgacatcatcgttcttgatcaccacaaacccgccctg
gatgaaaaaggcgttcaaaagcttcctctagccatcaccgtcaaccccaaccggcaggac
tgcccttctgggcttggccatgtgtgcgccaccacggtcgctttcctggccatggtggcg
cttgtgcggacgttgcgccagcgcggttggttcaagcttggcgaacgtgctgaacccaat
ctcattaacttgttggatgtcgtagcgctggccacgatctgcgatgtgatgcccttgcgc
ggtttcaaccgcgccctggtcaagcagggcattgcggtgctggggcgtggtgaacgggtg
gggctgcgcgccctcagcacagtggctggcgtgcgtgaaagcaccagcgccatggcttgc
ggctttgcattggggccgcgcatcaacgctggcggccgcataggcaatgctggactgggt
ttgaagctactgctttctgatgatgagggggaggcaagcgccattgccgccgaactcaac
agtgtgaacgtcaaacgccgccaggtggagcaagccatcttggaagaggccatgcggcaa
ggggaagagcagatggcggcaggccatgccgctctgttcgttcatggccgtgattggcac
cccggtgtggttggcatcgtggcaggacgcttgaaggaacgtttcaaccgccccaccctg
gtgggtggccttgtcgtaggggaaggtggggaagagatcatcaaagggtcagcgcgttct
atcgatgggctcgacattggcgctgccatcctcaaggccagcgccgctggggccattctt
ggcggtggcggccatgccatggccgcgggctttgccttgggccccgcacaggtggaaggc
ttccacaaattgcttgatgaggagctggccgccgcctgccaacttcccgcccgcccaccc
ctttatgtggatggatgcctcagcctgcatggcgccaacagaaacctggccctggaactg
gaagccctggccccttttggtcccggcaaccctcaacccgttctggtactggagaatgtg
cgctgccgctatgtgaagcgcattggcaaagacagcaacacgttgatgctgacctttgag
gatgaaagcggcacggcaacactgaaagccttggcgttcagggcaggtgacaaggccttc
acccccttgctggaagacagttcgcgccccttgctgcatgtcgctggcaccctccagcgg
gacgattggcaagaacgcaaaagcgttgcctttttcattgaagatgtggcacgcgcttaa
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