Formicincola oecophyllae: E3E12_05035
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Entry
E3E12_05035 CDS
T06093
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
swf
Formicincola oecophyllae
Pathway
swf02024
Quorum sensing
swf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3E12_05035 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
E3E12_05035 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swf03019
]
E3E12_05035 (hfq)
03036 Chromosome and associated proteins [BR:
swf03036
]
E3E12_05035 (hfq)
Messenger RNA biogenesis [BR:
swf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
E3E12_05035 (hfq)
Chromosome and associated proteins [BR:
swf03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
E3E12_05035 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Motif
Other DBs
NCBI-ProteinID:
QDH13658
UniProt:
A0A4Y6UAQ6
LinkDB
All DBs
Position
1144151..1144435
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AA seq
94 aa
AA seq
DB search
MTDTTPSNAPSPHAVQDVFLCHLRRSAEAVTIFLVNGVKLQGTVSSFDRNTILLKRDGHV
QLVYKSAISTIMPSTPMPRDMVEGLEEYPAAGDF
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaccaccccctcaaacgctccctccccccatgctgttcaggatgttttcctg
tgccacctgcgccgcagcgctgaagctgtgacgattttcctggtcaatggcgtcaagctt
caaggcactgtgagtagctttgaccgcaacaccatcctgcttaagcgcgatggtcacgtg
cagcttgtctacaaaagcgccatcagcaccatcatgcccagcacacccatgccgcgcgac
atggttgaagggcttgaggaataccccgctgcaggtgatttctga
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