Formicincola oecophyllae: E3E12_08395
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Entry
E3E12_08395 CDS
T06093
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
swf
Formicincola oecophyllae
Pathway
swf03420
Nucleotide excision repair
swf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
swf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E3E12_08395
03430 Mismatch repair
E3E12_08395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swf03400
]
E3E12_08395
Enzymes [BR:
swf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E3E12_08395
DNA repair and recombination proteins [BR:
swf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E3E12_08395
MMR (mismatch excision repair)
Other MMR factors
E3E12_08395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
ProSAAS
AAA_22
AAA_11
Tudor_1_RapA
Motif
Other DBs
NCBI-ProteinID:
QDH14202
UniProt:
A0A4Y6U9Y6
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All DBs
Position
1895197..1897911
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AA seq
904 aa
AA seq
DB search
MKRVVTHQRSPSPPAETPSLFTYSGDQGVAEPSPSQATTPAVEEPPPADEGAYGAFDPSS
PASPPPEGPPDPEKEQERAQDGAQSDYTAHPPLPEEPPTGPFTATAAAGDYLSGLNAAQR
RAVETTEGPLLILAGAGTGKTRVLTTRFAHILLEGRAWPGQVLAVTFTNKAAREMRERIS
ALLGRPVEGMWLGTFHALCARMLRTHAPLVGLGRDFTVLDSDDQTRLLKQIMAGQAVDQK
RWPARQLLSRIQLWKDSGLLPSDIGPTEDDGMAGGQARALYTRYQQRLRELNACDFGDLM
LHMVSLFRAHPEVLAQYRRKFRYIMVDEYQDTNRIQYEWLKMLAQPEAGGSQGAGEAPRA
PNIACVGDDDQSIYSWRGADISNILSFEKDFPSAAIVRLESNYRSTAHILGAASGVISFN
EGRLGKTLHPSDAAEEGERVMVVDAADSAAEARLVAQMAKRLHQSVPQDWGDMAVLVRAG
FQTRPFEEVLMREGLPYQVVGGVRFYERAEVRDAIAYIRAMAQPHDDLAFERIINVPRRG
VGAASLQRLRDEASARGLSLQQAVAATLKEGKMKGKAATQLAMLLEVLEKGRAMLGAGPG
GAQDLQAHQGASAGGGLRESLGPSHVQAANQVLEGSGYLQMWRDDKSVEAPGRLENLAEL
LHAMGDYPSLPAFLEHVALVMDSDTVRDDGGRLSLMTLHAAKGLEFDTVFLPGWEEGVFP
SQRSVDERGQEGLEEERRLAYVGLTRARKRAVVLNAARRRLYNGWQDAIPSRFLDELPEH
HIYRQSQRRPGQPAPHQRSAWGAPSGGTFKHPYRGGTFRAQDAGSGRPGTATTPVRAPAE
SVPSSTPARPRPTMRPHSFTLGQMVQHNRFGEGTILAVEGDRLTIHFQDHGDRRIMARFV
TPLS
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagggttgtgacccatcaacgctccccctccccccctgccgagacaccatcactg
ttcacgtacagtggcgaccaaggcgtggcggaaccttcccccagccaggccaccaccccc
gcagtggaggagccgccgcctgctgacgaaggtgcctatggcgcctttgaccccagcagc
ccggccagcccaccccctgaaggcccccctgaccctgaaaaagaacaagagagggcgcag
gatggggcgcaaagtgattatacagcacacccacccctgccagaggaaccgccaacgggc
cctttcaccgctaccgctgcagctggggactatctctctgggttgaacgcggcccaaagg
cgcgctgtggaaaccacggaaggccccttgttgatcctggctggtgctggcacaggcaaa
acacgcgtcctgaccacacgctttgcccacatcctgttggaagggcgtgcctggccaggg
caggtgctggctgtgaccttcaccaacaaagccgccagggagatgagggagcgcatcagc
gcgctgctcggcaggcctgtggaagggatgtggcttggcacgttccacgcgctctgcgcg
cggatgctgcgcacccacgccccgcttgtggggcttgggcgtgactttaccgttctggac
agcgatgaccagacgaggctcctcaagcaaatcatggctggccaggccgttgaccagaag
cgctggccagcgcggcagctcctcagccgtattcaactttggaaggatagcgggcttctg
ccaagcgacattggcccaacagaggatgacgggatggccggcggccaggcgcgcgcgctc
tacacccgttaccagcagcgcctgcgcgaactcaacgcctgcgacttcggcgacctgatg
ctgcacatggtcagcttgtttcgcgcccacccggaagtcttggcgcagtaccgcaggaag
ttccgctacatcatggttgatgagtaccaggacactaaccgaattcagtacgaatggctg
aaaatgctggcccagcctgaagcgggcggcagccagggcgctggcgaggcaccacgagcc
cccaacatcgcctgcgtgggcgatgacgaccagtccatctactcctggcggggggcggat
atcagcaatattctgagctttgagaaggactttcccagtgccgccattgtgcggctggaa
agcaactaccgctccacagcgcacatcctgggggcggcttctggcgtcattagtttcaac
gaggggcggcttggcaagaccctccacccctctgacgcggcagaggaaggcgagcgcgtc
atggtggtggacgccgctgattcagctgctgaggcccgcctggtggcgcagatggccaag
cgccttcaccaaagcgtgccgcaggactggggggatatggccgttctggtacgcgctggc
ttccagaccaggccgtttgaggaagtcttgatgcgcgaaggcctgccctaccaagttgtg
ggcggcgtgcgcttttatgaacgcgctgaagtgcgtgacgccatcgcttacatccgcgcc
atggcccagccccatgacgacctggcgtttgaacgcatcatcaacgtgccaaggcgtggt
gttggcgcagcctccctgcagcgcctgcgcgatgaggccagcgcgcgcgggctttcgctg
cagcaagctgtggcagccaccctcaaagagggcaaaatgaaaggcaaggccgccacccag
ctggcaatgctgctggaggtgctagagaaaggccgtgccatgctgggcgcagggccaggt
ggcgcccaagatctccaagcccaccagggcgccagcgctggcggggggctgcgcgaaagc
ctgggaccaagccatgtccaggccgccaaccaagtgctggaaggcagtggttacctgcag
atgtggcgtgacgacaaaagcgtggaggccccaggccggctggaaaacctggccgagctc
ctccacgccatgggggactacccctccctgccagccttcctggaacatgtggcgctggtg
atggacagtgacactgtgcgcgatgatggcggccgcctttccttgatgacgctgcacgct
gccaaggggttggagttcgataccgttttcctgcctgggtgggaggagggggtcttcccc
tcccagcgctctgtggatgagcgcggccaggaagggctggaggaggagcggcgcctggcc
tatgtagggctaacgcgcgccaggaagcgcgccgtggtgctgaacgctgccaggcggcgc
ttgtacaatggctggcaggatgccatcccaagccgcttcttggatgaactgcccgaacat
cacatctaccgccaaagccagcgccgcccagggcaacctgcaccccaccagcgcagcgcc
tggggcgcgcctagtgggggcacatttaagcacccttacaggggtggaaccttcagggcg
caggacgctggcagtgggcgcccaggcacagccaccacgcccgtgcgcgcgcctgctgag
tcagttcccagcagcacgccagccaggccccgcccaaccatgcgcccccacagcttcacg
ctggggcagatggtccagcacaaccgctttggcgaaggcaccattctggctgtggaaggt
gaccgcttgaccatccatttccaggaccacggcgacaggcgcatcatggcgcgcttcgtc
acccctctttcctaa
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