Rhizorhabdus wittichii RW1: Swit_0042
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Entry
Swit_0042 CDS
T00538
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
swi
Rhizorhabdus wittichii RW1
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
swi03016
]
Swit_0042
Enzymes [BR:
swi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Swit_0042
Transfer RNA biogenesis [BR:
swi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Swit_0042
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABQ66415
UniProt:
A0A9J9H7J8
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All DBs
Position
complement(42513..43700)
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AA seq
395 aa
AA seq
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MHESMHIHPLITDSATLANLCTRLAASPYVVVDTEFMRESTYWPDLCLIQIANSEEAAAI
DPKAKDIDLTPLLDLLVENEEVLKVFHAGGQDLEIVHNLTGKTPYPLFDTQVAAMAMGLG
EQIGYSNLVETMLGIKLDKGARFTDWARRPLDKRQIDYAIGDVTHLSAIFPRMLERLRKS
GRGGWLDNEMERLGDPASYANLPELAWTRIRLPSRKPEVLGRLKAIAAWREREARSKNLP
RGRIAKDETLADLASHPPKVQADLSRVRGLSPSWAQNDIGARLMSSIADAEPLPDAEMPP
REDRKPGLGKEGALIADLLKLLLKVRSRDADVAPRLIARADDLELLAAGVRDLPMLDGWR
FDIFGKDALALVEGRLAFSVRNGRMVMSALDGDQG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgcacgaaagcatgcacattcaccccctgattaccgacagcgcgacgctcgccaatctc
tgcacccgcctcgccgcctcgccctacgtcgtggtcgacaccgaattcatgcgcgagagc
acctattggcccgacctctgcctgatccagatcgccaacagcgaggaagccgccgcgatc
gaccccaaggcgaaggacatcgacctcacgccgctgctcgacctgctggtcgagaatgag
gaggtgctcaaggtcttccatgccggcggccaggacctggagatcgtccacaacctgacc
ggcaagaccccctatccgctgttcgacacgcaggtcgcggcgatggcgatggggctgggc
gagcagatcggctattcgaacctggtcgagacgatgctgggcatcaagctcgacaagggc
gcgcgcttcaccgactgggcgcgccgcccgctcgacaagcggcagatcgactatgcgatc
ggcgacgtcacccatctctcggcgatcttcccccgcatgctggagaggctgcgcaagtcg
ggacgcggcggctggctcgacaacgagatggaacgactcggcgatcccgccagctacgcc
aacctgcccgaactggcctggacccgcatccgcctgcccagccgcaagcccgaggtgctc
ggccggctcaaggcgatcgccgcctggcgcgagcgcgaggcgcggtcgaagaacctgccg
cgcggccgcatcgccaaggacgagacgctggccgacctcgcctcgcatccgcccaaggtg
caggccgacctgtcgcgggtgcgcggcctgtcgccgagctgggcgcagaacgacatcggc
gcccggctgatgtcctcgatcgccgatgccgagccgctgcccgatgccgagatgccgccg
cgcgaggaccgcaagcccggtctcggcaaggaaggcgcgctgatcgccgacctgctcaag
ctcctcctcaaggtccgctcgcgcgacgccgacgtcgcgccgcgcctgatcgcgcgcgcc
gacgatctcgaactgctcgccgcgggcgtccgcgacctgccgatgctcgacggctggcgc
ttcgacatcttcggcaaggatgcgctggcgctggtcgagggccggctggcgttcagcgtg
cgcaacggccggatggtgatgtcggcgctcgacggcgaccaagggtaa
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