Entry |
|
Name |
(GenBank) DNA polymerase I
|
KO |
|
Organism |
swi Rhizorhabdus wittichii RW1
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:swi00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Swit_0450
03410 Base excision repair
Swit_0450
03420 Nucleotide excision repair
Swit_0450
03440 Homologous recombination
Swit_0450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:swi03032]
Swit_0450
03400 DNA repair and recombination proteins [BR:swi03400]
Swit_0450
Enzymes [BR:swi01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Swit_0450
DNA replication proteins [BR:swi03032]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Swit_0450
DNA repair and recombination proteins [BR:swi03400]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Swit_0450
NER (nucleotide excision repair)
GGR (global genome repair) factors
Swit_0450
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(477314..480139)
|
AA seq |
941 aa
MFPPAPTPAIHPGMSSKHLYLVDGSGYIFRAYHRLPPLTNRHGIPAGAVYGFTTMLWKLI
NELHQADGPTHLAVILDASSKTFRNEMYDQYKAHRPPPPEDLVPQFPLIRDAVRAFSVPC
IEELGLEADDIIACYAEAALAQDWQVTIVSSDKDLMQLIRPGLDLLDTMNNRRLGREHVL
EKFGVEPEALGDVLALMGDSVDNVPGVPGIGPKTASQLIQQFGTLDAVLASTDQITKPKL
KQSLIDHADNARLSRELVRLKCDAPLPEPLDGLELKGLPPEPLRAFLEDQGFKSLLAKVQ
GDGPATLPTGGPTMLALAPGAEEKPAPVIAQVPFNHKDYETVVDEAALDRWIADGFACGR
IAVDTETDNVDPVRANLVGVSLSTAPGKACYIPLAHIGDGLLSETPRQIAMDAALAKLKP
LLEAAHILKIGQNIKYDMVVLAKYGVDVAPYDDTMLLSYDLDAGLGGHGMDELAQRHLDH
GCIEFKTVCGTGKSQISFDKVTLDVATEYAAEDADVTLRLWQLLKGRLAPEAATRVYELI
DRPLVPVLTGMERAGIKVDREELARLSAEFSGEATRLEAAIHAEAGTPFTVGSPKQLGDI
LFDKMGLKGGRKGKTGVYSTDVTELERLAGDGVAIARLVLDWRQLTKLRSTYTDALQQQI
NPATGRVHTCFSMAVAQTGRLSSTDPNLQNIPIRSDHGRRIRDAFVAEPGKLILSADYSQ
IELRLAAHMADVPALKDAFARGDDIHALTAQEVFGEVNRDTRARAKTINFSILYGISAWG
LAGRLEVSREEAQGMIDRYFSRFPGINHYIAATLGQVRDQGYVSTLFGRKTHLPWIRSAK
QGERQSAERQAINAPIQGTSADIIKRAMVRMNPALAAAGLGDVKMLLQVHDELVFELAPE
QVEPASAVIRAVMAGAAEPIVRLSVPLGVEIGTGPSWGAAH |
NT seq |
2826 nt +upstreamnt +downstreamnt
atgttcccccctgccccgacgcctgctatccaccccggcatgtcatccaagcatctctat
ctggtcgacggctccggctatattttccgggcctatcatcgcctgccgccgctcaccaac
cgccacggaatcccggccggggccgtctacggcttcacgacgatgctgtggaagctgatc
aacgagctgcaccaggccgacggaccgactcacctggcggtgattctcgacgcctcgtcg
aagaccttccgcaacgagatgtacgaccagtacaaggcgcaccggccgccgccgcccgaa
gacctggtgccgcaattcccgctgatccgcgacgcggtgcgcgccttctcggtcccctgc
atcgaggaattggggctcgaggccgacgacatcatcgcctgttatgccgaagccgcgctg
gcgcaggactggcaggtcacgatcgtctcgtccgacaaggacctgatgcagctcatccgg
cccggcctcgacctgctcgacacgatgaacaaccgccgcctcggccgcgagcatgtgctg
gagaaattcggcgtcgagccggaggcgctgggcgacgtgctcgcgctgatgggcgacagc
gtcgacaatgtccccggcgtccccggcatcggacccaagaccgcgagccagctcatccag
cagttcggcaccctcgacgcggtgctggccagcaccgaccagatcaccaagcccaagctc
aagcagtcgctgatcgaccatgcggacaacgcccggctgtcgcgcgagctggtccgcctg
aaatgcgatgcgccgctgcccgagccgctcgacgggctggaattgaagggcctgccgccc
gagccgctgcgcgccttcctggaggaccagggcttcaagtcgctgctcgccaaggtgcag
ggcgacggccccgccaccctgccgaccggcggcccgaccatgctggcgctcgcgcccggc
gccgaagagaagccggcgcccgtgatcgcgcaggtgccgttcaaccataaggattacgag
accgtcgtcgacgaggcggcgctcgaccgctggatcgccgacggcttcgcctgcggccgg
atcgcggtcgacaccgagaccgacaatgtcgatccggtccgcgccaacctggtcggggtc
agcctgtccaccgcgccgggcaaggcctgctacatcccgctcgcccatatcggcgacggg
ctgctgtcggagacgcccaggcagatcgcgatggacgcggcgctggcgaagctcaagccc
ctgctcgaagccgcgcacatcctcaagatcggccagaacatcaaatatgacatggtcgtg
ctggccaaatacggcgtcgacgtcgcgccctatgacgacacgatgctgctgtcctacgat
ctcgacgccgggctcggcggccacggcatggacgaattggcgcagcgccacctcgaccat
ggctgcatcgagttcaagacggtgtgcggcaccggcaagagccagatcagcttcgacaag
gtgacgctcgacgtcgccaccgaatatgccgccgaggacgccgacgtcacgctgcgcctg
tggcagctgctgaaggggcggctcgcgcccgaggcggcgacccgcgtctatgagctgatc
gaccggccgctggtgccggtgctgacgggcatggagcgcgccggcatcaaggtcgaccgc
gaggaactggcccggctgtcggccgagttctcgggcgaggcgacccggctggaggccgcg
atccacgccgaggcggggacgccgttcaccgtcggcagccccaagcagctcggcgacata
ttgttcgacaagatgggcctgaagggcggccgcaagggcaagaccggggtctattcgacc
gacgtcaccgaactggagcggctcgccggcgacggcgtggcgatcgcgcggctggtgctc
gactggcgtcagctcaccaagctgcgctcgacctataccgacgcgctccagcagcagatc
aatccggcgacgggccgggtccacacctgcttctcgatggcggtcgcgcagaccggccgg
ctgtcctcgaccgatcccaacctccagaacatcccgatccgcagcgaccatggccgccgt
atccgcgacgccttcgtggccgagccgggcaagctcatcctgtcggccgactattcgcag
atcgagctgcggctggcggcgcacatggccgacgtgccggcgctgaaggacgccttcgcg
cgcggcgacgacatccacgcgctgaccgcgcaggaggtgttcggcgaggtcaaccgcgac
acccgcgcccgcgccaagacgatcaacttctcgatcctctacggcatctccgcctggggc
ctcgccgggcgcctggaggtgtcgcgcgaggaagcgcaggggatgatcgaccgctatttc
tcccgcttccccggcatcaaccactatatcgccgcgaccctcggccaggtccgcgaccag
ggctatgtgtcgacgctgttcggccgcaagacccatctgccgtggatcaggagcgccaag
cagggcgagcgccagtccgccgagcgccaggcgatcaacgccccgatccagggcacctcc
gccgacatcatcaagcgcgcgatggtgcggatgaaccccgcgctcgccgccgccgggctg
ggcgacgtgaagatgctgctccaggtccatgacgaactggtgttcgagctggcgcccgag
caggtcgagccggcatcggcggtgatccgcgcggtgatggcgggcgcggccgagccgatc
gtccggctgtcggtgccgctgggcgtcgagatcggcacggggccgagctggggcgccgcg
cattga |