Rhizorhabdus wittichii RW1: Swit_1326
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Entry
Swit_1326 CDS
T00538
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
swi
Rhizorhabdus wittichii RW1
Pathway
swi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Swit_1326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
swi03021
]
Swit_1326
03400 DNA repair and recombination proteins [BR:
swi03400
]
Swit_1326
Enzymes [BR:
swi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Swit_1326
Transcription machinery [BR:
swi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Swit_1326
DNA repair and recombination proteins [BR:
swi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Swit_1326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
DUF211
RNA_pol_L_2
TmoB
IDH
Motif
Other DBs
NCBI-ProteinID:
ABQ67691
UniProt:
A5V5X5
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All DBs
Position
complement(1484324..1485385)
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AA seq
353 aa
AA seq
DB search
MAVNAKNWQELKKPNGLEKKSGGDGKRKATFVAEPLERGFGLTLGNSLRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMQGDGPRRLQLSATGPAEVTAGMI
AASGDIEVMNTDLVICHLDDGATLNMELTADVGKGYVTAAANRPVDAPIGLIPVDALYSP
VRQVAYKVENTRVGQELDYDKLTLTIETDGTVTPEDALAYSARILQDQLQLFVHFDDGMA
ISAPAAGAGAAGGAAGEPEGDANQLNRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQK
TEAEMLRTPNFGRKSLNEIKEVLASMGLRLGMEIPGWPPENIEEMAKKLEQEF
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcaacgcaaagaactggcaggaactcaagaagccgaacggcctcgaaaagaag
tcgggcggcgatggcaagcgcaaggcgaccttcgtcgccgagccgctggagcgcggcttc
ggcctgacgctcggcaactcgctgcgtcgcgtgctgctgtcctcgctgcagggcgccgcc
gtcacctcgatcaagatcgagaacgtgctgcacgagttctcgagcctcgcgggcgttcgc
gaggacgtcaccgacatcgtcctcaacgtcaagcagatcgcgctcaagatgcagggcgac
ggcccccgccgccttcagctctcggcgaccggcccggccgaggtcaccgcgggcatgatc
gctgcttcgggcgacatcgaggtgatgaacaccgacctggtgatctgccacctcgacgac
ggcgcgaccctgaacatggaactgaccgccgacgtcggcaagggctatgtcaccgccgcc
gccaaccgtccggtcgacgcgccgatcggcctgatcccggtcgatgcgctctactcgccg
gtccgccaggtcgcctacaaggtcgagaacacccgcgtcggtcaggagctcgactatgac
aagctcacgctgacgatcgagaccgacggcaccgtcacgccggaagacgcgctggcctat
tcggcgcgcatcctgcaggaccagctccagctcttcgtccacttcgacgacggcatggcg
atctcggctccggccgcgggcgccggcgccgcgggcggcgctgcgggcgagccggaaggc
gacgccaaccagctcaaccgttacctgctcaagaaggtcgacgagctcgagctgtcggtc
cgttcggccaactgcctcaagaacgacaacatcatctacatcggcgacctggtccagaag
accgaggccgagatgctgcgcacgccgaacttcggccgcaagtcgctcaacgagatcaag
gaagtcctcgcttcgatgggcctccgcctgggcatggaaatcccgggctggccgccggag
aacatcgaggaaatggccaagaagctcgaacaggagttctga
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