Rhizorhabdus wittichii RW1: Swit_3001
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Entry
Swit_3001 CDS
T00538
Name
(GenBank) beta-lactamase domain protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
swi
Rhizorhabdus wittichii RW1
Pathway
swi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Swit_3001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swi03019
]
Swit_3001
Messenger RNA biogenesis [BR:
swi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Swit_3001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
RNase_J_C
Anti-Pycsar_Apyc1
RsbRD_N
Motif
Other DBs
NCBI-ProteinID:
ABQ69352
UniProt:
A0A9J9HDB9
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Position
3287761..3289401
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AA seq
546 aa
AA seq
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MTTPGNELLFLALGGSGEIGMNVNLYGTQGKWVMVDLGLTFADPGYPGVELILPDLAFIE
ERADDLLGVVLTHGHEDHIGAIPYLAADLGVPLYATRFTAELIKGKLDEEGLTGKVDLHV
IENEGSFQLGPFGFTYVPLAHSIPEGNALLIDTPHGRIFHTGDWKIDEAPLLGQPSTAEE
LTAIGDQGVLALVCDSTNVFNEEASGSEADVRKGLDEAIGACKARVLVTTFASNAARLQT
LGEVAQDTGRKLCVAGRSLDRIIRVAKASGYLQHFPPVIDVDEAMRLPPREVMIIATGGQ
GEARAALSRIAFDSHPIKLSAGDTVVFSSKQIPGNEIAIGRIQNALAAKGVEMITDRQAE
VHVSGHPGRPELKAMYGWIRPEIILPVHGELRHMAEQARFAKSLGVPHGIVQSNGTLVRL
APDGPKAIGHERTGRLVLDGDVILPADGSTMNERRRAGLYGFVGVTVVIGKDGRLKGEPA
LHLQGLPVEEDREDFVADACAAAADAVAKGGKDEAKLREAIRLAVRRRATSWTGKKPVVD
VAIIRV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
gtgacgactcccggtaatgaactgctcttcctggcgcttggcggctccggggagatcggc
atgaacgtcaatctctacggcacccagggcaaatgggtgatggtcgacctcggcctcacc
ttcgccgatcccggctatccgggggtcgagctgatcctgcccgacctcgccttcatcgag
gagcgcgccgacgacctgctcggcgtcgtgctgacccatgggcatgaggaccatatcggc
gcgatcccctatctcgccgccgacctcggcgtgccgctctacgcgacgcgcttcaccgcc
gagctgatcaagggcaagctcgacgaggaagggctgaccggcaaggtcgacctccatgtg
atcgagaatgagggcagcttccagctcggcccgttcggcttcacctatgtcccgctcgcc
cattcgattcccgagggcaacgcgctgctgatcgacacgccgcacggccgcatcttccac
accggcgactggaagatcgacgaggcgccgctgctcggccagccctcgaccgccgaggag
ctgaccgcgatcggcgaccagggcgtgctcgcgctggtctgcgattcgaccaacgtcttc
aacgaggaggcgtcgggctccgaggccgacgtccgcaagggcctcgacgaggcgatcggc
gcctgcaaggcgcgcgtgttggtgacgaccttcgcgtcgaacgccgcgcggctccagacg
ctgggcgaggtcgcgcaggataccgggcgcaagctgtgcgtcgctggccgctcgctcgac
cgcatcatccgcgtcgccaaggcgagcggctatctccagcatttcccgccggtgatcgac
gtcgacgaggcgatgcgcctgcccccgcgggaggtgatgatcatcgccaccggcggccag
ggcgaggcgcgcgccgcgctgtcgcgcatcgccttcgacagccacccgatcaagctgtcg
gcgggcgacacggtggtgttctcgtcgaagcagatccccggcaacgagatcgcgatcggc
cgcatccagaacgcgctcgccgccaagggggtcgagatgatcaccgaccgccaggccgag
gtccatgtctcgggccatccggggcggcccgagctcaaggcgatgtacggatggatccgg
ccggagatcatcctgccggtccatggcgagctgcgccacatggccgagcaggcgcgcttc
gccaagagcctgggggtgccgcacggcatcgtccagtcgaacggcacgctggtgcggctg
gcgcccgacggtccgaaggcgatcggccatgaacgcaccggccgcctcgtcctcgatggc
gacgtgatcctgcccgccgacggctcgacgatgaacgagcgccgccgcgccgggctctac
ggcttcgtcggcgtcaccgtcgtgatcggcaaggacgggcggctgaagggcgagcccgcg
ctccacctgcagggcctgccggtcgaggaggaccgcgaggacttcgtcgccgacgcctgc
gcggccgcggccgacgcggtcgccaagggcggcaaggacgaggccaagctcagggaagcg
atccgcctcgcggtgcgccgccgcgcgacctcgtggaccggcaagaagccggtggtcgac
gtcgcgatcatccgggtctga
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