Rhizorhabdus wittichii RW1: Swit_3468
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Entry
Swit_3468 CDS
T00538
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
swi
Rhizorhabdus wittichii RW1
Pathway
swi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Swit_3468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
swi03021
]
Swit_3468
03400 DNA repair and recombination proteins [BR:
swi03400
]
Swit_3468
Enzymes [BR:
swi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Swit_3468
Transcription machinery [BR:
swi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Swit_3468
DNA repair and recombination proteins [BR:
swi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Swit_3468
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
IniB
Motif
Other DBs
NCBI-ProteinID:
ABQ69814
UniProt:
A5VBZ8
LinkDB
All DBs
Position
complement(3809556..3813923)
Genome browser
AA seq
1455 aa
AA seq
DB search
MATQAVPATAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPADGYVSGLEKTLRS
VFPIRDFAGTAELDFVQYELEDPKYDTDECRQRGMTYAAPMRVTLRLIVFEVDPDTETRS
VLDIKEQDVYMGDMPLMTENGTFLINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFA
ARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLRALGDAVIEVNPDKGKFEAGDIV
AISGVNRACRVKAVAGRLVTVEDPTGAIIPGGLIQTAEGEKIGHVARIRLQGMSGEDILN
YFYRTQRFVRGENGWKVPFVAENWRGQKPAFDVVNADTGEVVFPAGTKISPRAANKAGKD
GLETLLIPTDQIFGRYSAYDLIDESTGRIYIEAGDEVTPENLEALDKAGFDHVDLLDIDH
VSTGPWIRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDSERYDLSAV
GRVKLNMRLELDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELL
ENQYRVGLLRMERAVKERMSSVDVSTAMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSR
VNKYGFIETPYRKIVDGKVTNEVVYLSAMEEAKHTIAQANAELDSEGRFVEDLISAREAG
EFLMAPRDHVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFV
GTGMEETVARDSGAAIAAKRSGIVDQVDATRIVVRATGAVDAGKSGVDIYTLMKFQRSNQ
STCINQRPLVKVGDVVNAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISER
IVKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGD
ILCGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHGIDK
DERAMAIEREEIDRLTKDREDERAILNRANYARLKEMLLGQIATAAPKGIKKGSEINEEL
LAEVEKREWWKFAVQDDARQADLEAVKAQYDDAVGLIVKKFEDRVEKLQRGDELPPGVLK
MVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMN
VGQIFETHLGWAARGLGKQVTSALEAWREANPDAQAATPPAAVVDRLKEVYGKEYHADIE
GRSTDQIVEMAGLLKNGVPMATPVFDGAREADVAEMLRRAGLDESGQVELFDGRTGDQFD
RKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYG
AAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSI
EDQSDDDDGLAEAAE
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atggccacccaggcagttccggcgaccgccaagaagcgcatccgcaaggtcttcgggaac
atccacgaagtcgtccagatgccgaacctgatcgaggttcagcgcgaatcctacgagcag
ttcctgcggtcgcgcccggccgacggctatgtctcgggcctcgaaaagacgctccgctcg
gtcttcccgatccgcgacttcgccggcaccgccgagctcgacttcgtccagtacgagctg
gaggacccgaagtacgacaccgacgagtgccgccagcgcggcatgacctatgcggcgccg
atgcgcgtcaccctgcgcctgatcgtgttcgaggtcgatcccgacacggagacccgctcg
gtcctcgatatcaaggagcaggacgtctacatgggcgacatgccgctcatgaccgagaac
ggcaccttcctgatcaacggcaccgaacgcgtcatcgtgtcgcagatgcaccgctcgccg
ggcgtgctgttcgaccatgaccgcggcaagacccatgcctcgggcaaatatctgttcgcc
gcgcgcgtcatcccctatcgcggctcgtggctcgacttcgagttcgacgccaaggacatc
gtcaacgtccgcatcgaccgcaagcgcaagctgccggtcacctcgctgctgcgcgcgctg
ggcgacgcggtgatcgaggtcaatcccgacaagggcaagttcgaggccggcgacatcgtc
gccatctcgggcgtcaaccgcgcctgccgggtcaaggcggtcgcgggcaggctcgtcacc
gtcgaggacccgaccggcgcgatcatcccgggcggcctgatccagaccgccgagggcgag
aagatcggccatgtcgcgcgcatccgcctgcagggcatgtcgggcgaggacatcctcaac
tatttctaccgcacgcagcgcttcgtgcgcggcgagaacggctggaaggtccccttcgtc
gccgagaactggcgcggccagaagccggcgttcgacgtcgtcaacgccgacaccggcgag
gtcgtcttcccggccggcaccaagatcagcccccgcgccgccaacaaggccggcaaggac
gggctcgagacgctgctgatcccgaccgaccagatcttcggccgctattcggcctatgac
ctgatcgacgagtcgaccggccgcatctacatcgaggccggcgacgaggtgacgccggag
aatctggaagcgctcgacaaggccggcttcgaccatgtcgacctgctcgacatcgaccat
gtctcgaccggcccgtggatccgcaacacgctgaaggccgacaaggtcgaggaccgcgac
catgcgctgagcgagatctatcgcgtcatgcgccccggcgagccgccgacgaaggagacc
gccgaggcgctgttcgccgggctgttcttcgactccgagcgctacgacctgtcggccgtc
ggccgcgtcaagctcaacatgcgcctcgaactcgacgccgaggacaccgtcaccaccctc
cgctcggaggacatattggcggtggtcaagacgctggtcgacctgaaggacggcaagggc
gagatcgacgacatcgacaatctcggcaaccgccgcgtccgttcggtcggcgagctgctg
gagaaccagtatcgcgtcggcctgctccgcatggagcgcgcggtgaaggagcggatgtcg
tcggtcgacgtgtcgacggcgatgccgaacgacctgatcaacgccaagccggcggtggcc
gcggtgcgcgaattcttcggctcgtcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtcacccacaagcgccgcgtctcggcgctcgggccgggcggcctcacccgc
gagcgcgcgggcttcgaggtccgcgacgtccatccgacccattatggccgcatctgcccg
atcgagacgccggaaggaccgaacatcggcctgatcaactcgctggcgagcttcagccgg
gtcaacaagtacggcttcatcgagacgccgtaccgcaagatcgtcgacggcaaggtgacc
aacgaggtcgtctacctgtcggcgatggaagaggccaagcacaccatcgcgcaggcgaac
gccgagctcgatagcgagggccgcttcgtcgaggacctgatctccgcccgcgaggccggc
gagttcctgatggcgccgcgcgaccatgtcacgctgatggacgtcagccccaagcagctc
gtctcggtcgccgcgtcgctgatcccgttcctggagaatgacgacgcgaaccgcgcgctg
atggggtcgaacatgcagcgccaggcggtgccgctggtccgcgccgaggcgccgttcgtc
ggcaccggcatggaagagacggtcgcccgcgattcgggcgccgcgatcgccgccaagcgc
tcgggcatcgtcgaccaggtcgacgcgacccgcatcgtggtccgcgccaccggcgcggtc
gacgccggcaagtcgggcgtcgacatctacacgctgatgaagttccagcgctcgaaccag
tcgacctgcatcaaccagcgcccgctggtgaaggtgggcgacgtggtcaacgccggcgac
atcatcgccgacggcccgtcgaccgagttcggcgagctggcgctgggccgcaacgtcctc
gtcgcgttcatgccgtggaacggctacaactatgaggactcgatcctgatctccgagcgg
atcgtgaaggacgacgtcttcacctcgatccacatcgacgagttcgaggtgatggcccgc
gacaccaagctcgggccggaggacatcacccgcgacatcccgaacgtcggcgaggaagcg
ctgcgcaacctcgacgaggcgggcatcgtctatatcggcgccgaggtcgagccgggcgac
atcctgtgcggcaagatcacgccgaagggcgagagcccgatgacgccggaggagaagctg
ctccgcgccatcttcggcgagaaggcctccgacgtccgcgacacctcgctgcggctgccg
ccgggcgtgtcgggcaccgtcgtcgacgtgcgcgtgttcaaccgccacggcatcgacaag
gacgagcgcgcgatggcgatcgagcgcgaggagatcgaccgcctgaccaaggaccgcgag
gacgagcgcgccatcctgaaccgcgccaactacgcgcggctcaaggagatgctgctcggc
cagatcgcgaccgcggcgccgaagggcatcaagaagggctccgagatcaacgaggagctg
ctcgccgaggtcgagaagcgcgaatggtggaagttcgcggtgcaggacgacgcccgccag
gcggacctggaggcggtcaaggcccagtatgacgacgccgtcggcctgatcgtcaagaag
ttcgaggaccgggtcgagaagctgcagcgcggcgacgagctgcccccgggcgtgctcaag
atggtcaaggtgttcgtcgcggtgaagcgcaagctgcagccgggcgacaagatggccggc
cgccacggcaacaagggcgtgatcagccgcatcctgccgcaggaggacatgccgttcctg
gaggacggcacccccgtcgacatcgtgctcaacccgctcggcgtgccgagccgcatgaac
gtcggccagatcttcgagacgcacctcggctgggccgcccgcggcctgggcaagcaggtg
acgagcgccctcgaagcctggcgcgaggccaatcccgacgcgcaggcggcgaccccgccg
gcggcggtcgtcgaccggctgaaggaggtgtacggcaaggaatatcatgccgacatcgaa
ggccgctcgaccgaccagatcgtcgagatggcgggcctgctgaagaacggcgtgccgatg
gcgacgccggtgttcgacggcgcccgcgaggccgacgtggccgagatgctgcgccgcgcc
gggctcgacgagagcggccaggtggaactgttcgacgggcgcaccggcgaccagttcgac
cgcaaggtgacggtgggctacatctacatgctgaagctccaccacctcgtcgacgacaag
atccacgcgcgctcgatcggcccgtacagcctggtcacccagcagccgctgggcggcaag
gcgcagttcggcggccagcgcttcggcgagatggaggtgtgggcgctccaggcctatggc
gccgcctacacgctgcaggagatgctgacggtgaagtcggacgacgtggtcggccgcacc
aaggtctacgaggcgatcgtcaagggcgacgacaccttcgaggccggcatccccgagagc
ttcaacgtgctcgtcaaggaaatgcggtcgctcggcctcaacgtcgagctgtcctcgatc
gaggaccagtccgacgacgacgacggcctggccgaagcagcggagtga
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integrated database retrieval system
