Rhizorhabdus wittichii RW1: Swit_3498
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Entry
Swit_3498 CDS
T00538
Name
(GenBank) Collagen triple helix repeat
Organism
swi
Rhizorhabdus wittichii RW1
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-ProteinID:
ABQ69844
UniProt:
A0A9J9LF19
LinkDB
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Position
3853873..3855717
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AA seq
614 aa
AA seq
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MSNSSHSHPVRRRLLSASALSILLLTSACSDGVGFDIGKGAGPTSPSGPSGPSGPSGPSG
PSGPSDPSGPSGPSGPSGPSGPSGPSGPSGPSGPSGPSGPSGPSGPSGAAPSTPVGISIG
GTSPLGPTGSGTLIGANILPGDKPSTGTLATVDVLTGDGTVADVKLPTTTNAVRKGLAPV
GSLVGAVAGKPIGNAVTGLTDRLAPTLSPVTGAVDGILSPVLGAANNALSPLTDPLVGSD
GALAPLTGAVTGLLGGVVGNLPGTPQSGSFAGPLAGLDLAGSKLSGASTGDTLVGLNLLP
GPAGATPVTGTLATASVLSGGQVVGLGLATTAPGVQAGLQPVVNLTGALLGPQIGGTVGE
LTSTLAPPVAALTSTVQTISNPIVSTVNTLATPIAGPLLTPTGPLAPVTNIVQTAVSTVT
SALASTGGGTGGSPSGPGDILAPVTGIVGSVLGGGSGGGSPSGPGAILAPVTNVVGAVLG
GGLGGAPSGSGDILAPVTGIVGSVLGGGTGGGSPVDPGSILAPVTGVVGAVLGGGSGGSP
ADPGAILAPVTGIVGSVLGGASGGSPSGAGNILAPVTGLVGSVLGGAGGTAPTGPAGPLA
PVTNLLGGLLGRGS
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattccagccattcgcatcctgtccggcggcgcttgctgagcgcgagcgccctg
tcgatcctgcttctcacctccgcctgttccgacggggtggggttcgatatcgggaagggc
gccggcccgacctcgcccagcggcccgtcgggccccagcggtccgtcggggccgagcggt
ccttccggtcccagtgatccttccggcccgagcggtcccagcggcccgtcgggtccgagc
ggcccgtccggaccttccggaccttccggtccgagtggtccttcaggtccgagcggcccg
tcgggtccgagcggtcccagcggggcagcgccgagtacgccggtgggcatctcgatcggc
ggcacctcgccgctcggcccgaccggatcggggacgctgatcggcgccaatatcctgccg
ggcgataagccctcgaccgggacgctggccaccgtcgacgtcctgaccggcgatggcacc
gtcgccgatgtcaagctgcccaccacgaccaacgccgtgcgtaaggggctcgccccggtc
ggatcgctggtcggtgcggtcgccggcaagccgatcggcaatgccgtcaccggtctgacc
gaccgactcgcgccgacgctgagcccggtcacgggtgcggtcgacggcatcctgtcgccg
gtgctgggcgccgccaacaatgcgctctcgccgctcaccgatccgctcgtcggatcggac
ggcgcgctcgcgccactgacgggggcggtcaccggcctgctcggcggggtggtcggcaac
ctgcccggcacgccgcagagcggctctttcgcagggccgctcgcagggctcgacctggcg
ggctcgaagctcagcggcgcatcgaccggcgacacgctggtcgggctcaacctgctgccc
ggaccggccggcgccacgccggtcaccggaacgctggcgacggcgagcgtcctgtcgggc
gggcaggtcgtcggcctcggcctggcgaccacggcgcccggcgtccaggccgggctccag
ccggtcgtcaacctgaccggggcgctgctcgggccgcagatcggcggaacggtcggcgag
ctgacctcgacgctggcgccgccggtcgcggcgctgacctcgaccgtccagaccatctcc
aacccgatcgtcagcaccgtcaacaccctcgcgaccccgatcgcgggaccgctgctcacc
ccgaccggcccgctcgcgcccgtcaccaacatcgtccagaccgcggtctcgacggtcacg
tcggcgctcgccagcaccggcggcggcaccggcggctcgccatcgggcccgggcgacatc
ctcgccccggtgacgggcatcgtcggatcggtgctcggcggcggttcgggcggcggttcg
ccgtcgggtccgggcgcgatcctggcgccggtcacgaatgtcgtcggcgctgtcctgggc
ggcggcctgggtggagcgccgtcagggtcgggcgacatcctcgcgccggtgacgggcatc
gtggggtcggtgctcggcggcggcacgggcggcggttcgccggtcgatccgggctccatc
ctggcgccggtcacgggcgtggtcggggccgtcctcggtggcggttcaggcggttcgccg
gctgacccgggagcgatcctcgcgccggtcacgggtatcgtcggttcggtgctcggcggg
gcctcggggggctcgccttccggcgcggggaacatcctcgcgcccgtcaccggcctggtc
ggctcggttcttggtggagcggggggaaccgcgccgaccggaccggcgggaccccttgcc
ccggtcaccaacctgctcggtggcctgctgggcaggggctcctga
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