Rhizorhabdus wittichii RW1: Swit_3848
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Entry
Swit_3848 CDS
T00538
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
swi
Rhizorhabdus wittichii RW1
Pathway
swi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Swit_3848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swi03019
]
Swit_3848
03009 Ribosome biogenesis [BR:
swi03009
]
Swit_3848
Enzymes [BR:
swi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Swit_3848
Messenger RNA biogenesis [BR:
swi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Swit_3848
Ribosome biogenesis [BR:
swi03009
]
Prokaryotic type
rRNA processing factors
Swit_3848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ABQ70193
UniProt:
A0A9J9HEJ0
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All DBs
Position
4229355..4231997
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AA seq
880 aa
AA seq
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MTTRMLIDARHREETRVAVVQGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEEEALRAREAEHDDDGEEIEDD
GHDHHDDHDHDEDGEGGEERPRARRESVGGGSDDGAVENLRQRRMNLRRRYKIQDVIRRR
QVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKSIMA
ELNLPKTMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIRENTLGSQAPALIYGDSDLIKR
AIRDIYNRDIDEVVVEGEEGYRQARAFMKLLMPSHAKKVGLYADAVPLFQRFGVEDQLAA
MYQPIVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAHEIARQLRLR
DMAGLIVIDFIDMENNSNIRKVEKAMKEALKNDRARIQVGRISSFGLFEMSRQRLRTGVL
EASTRQCPHCEGTGLIRTASSAGLSALRMLEDEAARGRGSRLLLRASQEAAFYVLNRKRA
ELAEIEERYGVVIEIVSDGTLEGARMSVEAGGPPPSHAPRLPAPLPIEADDDIEEEIEDE
EEEEIAAEDEGQEDGERGDGNRRRRRRRRRRGGRGRDQDGQGEAGQADEAGETDEADEPS
EEAEEAAAEDGSAEPRGRRRRGRRSGRRRSGEGAETEGEAIEQAEAPLSEPVAEDAPVAA
ESEAVAEEAAPAEPAPKTRRRPRARKADAAPVEAVEMPAEEAAPVAAEPEAEPVAEAPKP
RRGGRRKKAEVEAEAAAAPAAVEAASVEAAPAEPEAEPAAEAAPKRRTRSRAKAAAAAPA
ETVEAVAEVSEPAGEAASAEEAEEDGGSPRRGWWQRTFGA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgacaacccgcatgcttatcgacgcacgccaccgggaggaaacccgcgtggcggtcgtc
caggggaaccggatcgaggaatttgactttgagtctgccgagcgcaagcagctcaagggg
aatatctatctcgccaaggtaacgagggtcgaaccgtcgcttcaggcggcgttcgtcgac
tatggcggcaaccgccacggcttcctcgccttctcggaaatccaccccgattattatcag
atccccaaggaggaccgcgaggcgctgctccgcgaggaggccgagcatgccgccgaggaa
gaggcgctgcgcgcccgcgaggcggagcatgacgacgacggcgaggagatcgaggacgac
ggccacgatcaccatgacgaccatgatcatgacgaagacggcgaaggtggcgaggaacgc
ccccgcgcgcgccgcgaatcggtcggcggcggttccgacgatggcgccgtggagaatctg
cgccagcgccggatgaacctgcgccgccgctacaagatccaggacgtgatccgccggcgg
caggtgctgctggtccaggtcgtcaaggaggagcgcggcaacaagggcgcggcgctgacc
acctatttgtcgctggccggccgctattgcgtgctgatgccgaacaccagccatggcggc
ggcatcagccgcaagatatcgaacgcggccgaccgcaagcggctcaagtcgatcatggcc
gagctgaacctgccgaagacgatgggctgcatcgtccgcaccgccggcctccagcgcacc
aagaccgagatcaagcgcgacttcgactatctcgcccggctgtgggacgagattcgcgag
aacacgctcggttcgcaggcgccggcgctgatctacggcgacagcgacctgatcaagcgc
gcgatccgcgacatctacaaccgcgacatcgacgaggtcgtggtcgagggcgaggagggc
tatcgacaggcccgcgccttcatgaagctgctgatgccgagccacgccaagaaggtcggg
ctctatgccgacgcggtgccgctgttccagcgcttcggcgtcgaggaccagctcgcggcg
atgtaccagccgatcgtccagctcaagtcgggcggctatctggtgatcaacccgaccgag
gcgctggtgtcgatcgacatcaactcgggccggtcgacccgcgagcataatatcgagcag
accgcgaccgcgaccaacctcgaggccgcgcacgagatcgcccgccagctccgcctgcgc
gacatggcgggcctgatcgtcatcgacttcatcgacatggagaacaactccaacatccgt
aaggtcgagaaggcgatgaaggaggcgctcaagaacgatcgcgcccgcatccaggtcggc
cgcatctccagcttcggcctgttcgagatgagccgccagcgcctgcgcaccggcgtgctc
gaggcctcgacccggcagtgcccgcattgcgagggcaccggtctgatccgcaccgcctcc
tcggcgggcctgtcggcgctgcgcatgctcgaggacgaggccgcgcgcggccgcggctcg
cgcctgctgctgcgcgccagccaggaagccgccttctacgtcctcaaccgcaagcgcgcc
gagctggccgagatcgaggagcgctacggcgtcgtcatcgagatcgtctccgacggcacg
ctcgaaggcgcgcggatgagcgtcgaggccggcggtccgccgccgagccatgcgccgcgc
ctgcccgcgccgctcccgatcgaggccgatgacgacatcgaggaggagatcgaggacgaa
gaggaggaggagatcgccgccgaggacgaaggccaggaggatggcgagcgtggcgacggc
aatcgtcgccgtcgccgtcgtcgccgtcgtcgtggcggtcgcggtcgcgatcaggatggc
cagggcgaggccggccaggccgatgaggccggcgagaccgacgaagccgacgagccttcc
gaggaggccgaggaggccgccgccgaggatggctccgccgagccgcgcggccgtcgccgc
cgtggccgtcgctcgggccgtcgccgtagcggcgaaggcgccgagaccgagggtgaggcg
atcgaacaggccgaggctccgctgagcgagccggtggccgaggacgcgccggtcgcggcc
gagtccgaagccgtcgccgaggaagcggcccccgccgagccggcaccgaagacgcgccgc
cggccgcgtgcccgcaaggccgatgccgcccccgtcgaggctgtcgagatgccggccgag
gaggcagcgcccgtcgccgccgagcccgaggccgaaccggtcgccgaggcgcccaagccg
cgccgtggcggtcgccgcaagaaggccgaggtcgaggcggaagccgctgcggcccccgcc
gccgtggaagctgcgtcggtcgaagccgctccggccgagccggaagccgagcctgccgcg
gaagccgcgcccaagcgccgcacccgttcgcgggccaaggccgccgctgccgcgccggcc
gagaccgtcgaggccgtggctgaagtctccgagcctgccggcgaagccgcctccgccgaa
gaggcggaggaggacggcggttcgccgcgccgcggctggtggcagcggaccttcggcgcc
tga
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