Rhizorhabdus wittichii RW1: Swit_4099
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Entry
Swit_4099 CDS
T00538
Name
(GenBank) Uracil-DNA glycosylase superfamily
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
swi
Rhizorhabdus wittichii RW1
Pathway
swi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Swit_4099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swi03400
]
Swit_4099
Enzymes [BR:
swi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Swit_4099
DNA repair and recombination proteins [BR:
swi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Swit_4099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
DEC-1_N
Motif
Other DBs
NCBI-ProteinID:
ABQ70442
UniProt:
A0A9J9LE75
LinkDB
All DBs
Position
complement(4503601..4504386)
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AA seq
261 aa
AA seq
DB search
MSDMDLGASLGSTAEITSLMGWWEDAGLDVLVDEAPRDWLARVVPPVARPVAAVAAPAPV
PAQPTVAAPIPAQPAARAAAFPDTLDGFQSWLATSDEITMPMSARIAASGDPATGLMVLV
DLPEAEDPANGRLLSGPAGDLFDKMLGAMGRDRQSLYLSAMAPGRPSGGFVDPTQGALFG
RLARHHVLLAQPRALLLMGEQPSRTFLNLGFVEARGRVHDVQLPGGAVNAVATFHPRTLL
QHPQQKRRAWEDLQLLMKLLG
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatatggatttgggggcaagtctcggttcgaccgcagaaatcacgagcctaatg
ggttggtgggaggatgcagggctcgacgtgctggtggacgaggctccgcgcgactggctc
gcgcgtgtcgttccgcccgtcgcgcggcccgttgcggccgtcgcggcccccgctccggtt
cccgcgcaaccgaccgtcgcggccccgattccggcccagcccgccgcccgcgccgccgct
tttcccgacacgctcgacggcttccagtcctggctcgccaccagcgacgagatcaccatg
ccgatgtccgcgcggatcgccgcctcgggcgatccggcgaccggcctgatggtgctggtc
gaccttcccgaggccgaggacccggcgaacggccggctgctgtcggggcccgccggcgac
ctgttcgacaagatgcttggcgcgatgggccgcgaccgccagtcgctctatctctccgcc
atggcgcccggccgcccctccggcggcttcgtcgatcccacccagggcgcgctgttcggc
cggctcgcccgccaccacgtcctcctcgcccagccccgcgcgctgctgctgatgggcgag
cagccctcgcgcaccttcctgaacctcggcttcgtcgaggcgcgcggccgggtccacgac
gtccagcttccgggcggagcggtcaacgccgtcgcgaccttccacccccgcaccctcctc
cagcacccccagcagaagcgccgtgcctgggaagacctgcaactcctgatgaagctcctc
ggatga
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