Rhizorhabdus wittichii RW1: Swit_5285
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Entry
Swit_5285 CDS
T00538
Name
(GenBank) putative DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
swi
Rhizorhabdus wittichii RW1
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
swi03032
]
Swit_5285
03400 DNA repair and recombination proteins [BR:
swi03400
]
Swit_5285
Enzymes [BR:
swi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Swit_5285
DNA replication proteins [BR:
swi03032
]
Prokaryotic type
DNA Topoisomerases
Swit_5285
DNA repair and recombination proteins [BR:
swi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Swit_5285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ABQ71393
UniProt:
A0A9J9HGG3
LinkDB
All DBs
Position
pSWIT01:184563..185678
Genome browser
AA seq
371 aa
AA seq
DB search
MKTQEDAPADTGEAGTIVDAQEAAENAGLVYVTDDSPGIVRQPYRGKFRYRDARGNVVTD
EKTLKRIASLAIPPAYTDVWICPKANGHIQATGRDAKGRKQYRYHPRFREVRDSTKYEHM
LDFAKALPGVRERIDADLKKRGLPREKVLAAVVHLLETTMIRIGNADYAKQNKSYGLTTL
QDRHVAIDGAELRFNFKGKSGKQWRLKLKDRRIAKIVKASQDLPGQHLFQYVGEDGAQYE
VTSNDINAYLREISGTDITAKDFRTWNGTVLAALALSEYEKVDSQAAAKRNVRTAIEAVA
SRLGNTPTVCRKCYIHPEVFESYLSDELVLEARDAVEKELREDLSRLRPEEAVVLAFLQR
RLAEKAKIPAL
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacacaagaggacgcgccggccgacaccggcgaggcaggaacgatcgtcgatgcg
caggaagccgcggaaaatgcgggtctcgtctacgtaaccgacgacagcccgggaatcgtc
cgccagccctaccgtggcaagtttcgctatcgcgatgcccggggcaacgtcgtgacggac
gaaaaaaccctgaagcggatcgcttcgctcgccatccccccggcctataccgatgtctgg
atctgccccaaagcaaacgggcacatccaggcgaccggccgtgacgcaaagggccgcaag
cagtatcgttaccatccgcgtttccgcgaggtgcgcgacagcaccaagtacgagcacatg
ctggacttcgcaaaggcccttcctggcgtgcgcgaacgcatcgatgccgatctcaagaag
cgcgggctaccgcgcgagaaggtcctggccgccgtcgtgcatcttctcgagacaacgatg
atccgcatcggcaacgcggattatgccaagcaaaacaagagttatgggctcacgaccctc
caggaccgccatgtcgcgattgacggcgctgagctccgattcaatttcaagggcaagagc
ggaaagcagtggcggctgaagctgaaggatcggcgcatcgcgaagatcgtcaaggccagc
caggatctgcccggacagcatctgttccaatatgtgggcgaagacggcgcgcagtacgaa
gtcacctcgaacgatatcaacgcttatcttcgggagatttccgggacggacatcaccgcc
aaggatttccgcacctggaatggcacggtgctcgccgctctggcgctgtccgaatatgaa
aaggtcgacagccaggctgcggcgaaacgaaatgtccggaccgcaatcgaagccgtcgct
tcgcggcttggcaacacgcccactgtgtgccgcaagtgctacattcatcccgaagttttc
gagagctacctgagcgacgaattggtcctggaagcgcgggacgccgtcgagaaggagctt
cgggaagacttgtcccgcctccgtccggaagaagcggtcgtgctggccttcctacagcgc
cggctcgccgaaaaggcaaagatcccggcgttgtag
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