Syntrophomonas wolfei: Swol_1897
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Entry
Swol_1897 CDS
T00396
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
swo
Syntrophomonas wolfei
Pathway
swo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Swol_1897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swo03019
]
Swol_1897
03009 Ribosome biogenesis [BR:
swo03009
]
Swol_1897
Enzymes [BR:
swo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Swol_1897
Messenger RNA biogenesis [BR:
swo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Swol_1897
Ribosome biogenesis [BR:
swo03009
]
Prokaryotic type
rRNA helicases
Swol_1897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
ALOG_dom
Motif
Other DBs
NCBI-ProteinID:
ABI69195
UniProt:
Q0AVQ9
LinkDB
All DBs
Position
complement(2156054..2157646)
Genome browser
AA seq
530 aa
AA seq
DB search
MSFENFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGI
PILNRVIKGEGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQLRSLRR
NPEIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTF
LFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRIIDAQQ
PPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVATDL
AARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIERHT
GKRIERALLPTLAEAVEKRQDLLLERVRQASAEPGDVCLSLAEKLMQQGDPEKMLAAALK
LLIDEEPDFEMAELPESDDSMAHLELPAGRLQGIHPRQLLEFIATHTSLSPQRVGDIEIN
RNSTFVEVPMDYIHEVYEAFEKYRRTQKNKTRPARFPKENRKIMVNHGGR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
ttgagttttgaaaacttctacagcatggggctgaaaacggatcttttgcagatgattgat
gaaaaaggctttgaaaaaccaacccccattcaggttaaaagcattccgattgctatggcg
ggattggatcttatgggacaagcacaaacaggaactggtaagaccgcttcattcggtatt
ccgatattgaaccgggttatcaaaggagaggggctgcaggctctggtactttgccccacc
cgggaattggcggtgcaagtaactgaggagatatcttcattgagccgccgtatgcgcatc
caggtactggcaatttacggggggcaatctattgagctgcaattgcgctccttgcgtaga
aatccggaaatcattgtaggtactccaggacgtttgatggatcatatgaatcggggaacg
atttctttgtctccgttgaaatatgtggttttggatgaagctgatgaaatgttggatatg
ggttttttacctgatattcagaaaattcttagccaatgcccccgggaacggcagactttt
ttgttttctgctaccctgccggatgaagtgcgggaattgggaacgaagttcatgaaacag
ccggagattattcttattgaatctcctgaacgcacggttccggaaattgagcaatattat
taccaggtgaattcccggcgcaagatagaaaccttgtgtcgcattattgatgctcagcaa
ccacctataagcttgatattctgccgcaccaaaagaaatgctgatgaattggccagggtt
cttacttcccggggttataatgccgatgctttgcatggggatatgtcacaaagagaaaga
gatcatgttatgcatggttttcgccagggtaatacaaaaattctggttgccactgacctg
gcggctcggggactggatatagaattagtaacccatgtttttaactttgatatacctgaa
gacctggattcttatattcaccgggtgggccgcacgggacgggcagggcgcagtggtatt
gccataaccctggtagagcctacgcagataagattgttgcgtatgattgaaagacatact
ggcaaaagaattgaacgtgctcttctgcccaccctggcagaggcggtggaaaaaaggcag
gatttattattagagcgggttaggcaagcgagtgcggaaccgggagatgtttgcttgagt
ctggccgagaaattaatgcaacagggagatcctgagaagatgctggctgcagccctaaaa
ctcctgatagatgaagaaccggattttgagatggctgagctaccggaaagcgatgatagt
atggcccatttggaattaccagcaggacgtttgcagggaatacatccccgccagttgctg
gaatttattgcgactcatacttctttaagtccccagcgggtaggggatattgagattaat
cgcaattctacttttgtggaggttcccatggactatattcatgaagtatatgaagccttt
gaaaagtaccggaggacgcaaaaaaataaaactcgtcctgctcgattccccaaagagaat
cggaaaattatggtgaatcatgggggaaggtaa
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