Shewanella piezotolerans: swp_0435
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Entry
swp_0435 CDS
T00791
Name
(GenBank) Helicase, DEAD box
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
swp
Shewanella piezotolerans
Pathway
swp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
swp_0435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swp03019
]
swp_0435
Enzymes [BR:
swp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
swp_0435
Messenger RNA biogenesis [BR:
swp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
swp_0435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACJ27267
UniProt:
B8CHZ1
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All DBs
Position
453630..454943
Genome browser
AA seq
437 aa
AA seq
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MSETHLSTKKFADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKDIAGQAQTGTGKT
LAFLVATFNHLLTEAAPTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYG
GEGYEAQRKVLDKGIDILIGTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSM
EEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILE
QFTSGDIDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFA
CEEYALNLPAIESYIQHSIPVTSYDSEALLDDIPAPKRIHRKPSSHSRNSRDRSGSRPQG
GHRGNAPRRHDKTRRHS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttatctacaaaaaagtttgccgacttcccgttacataaagaagtt
caacaagcacttaacgaagttggttttgagttttgtacgccgatccaagcgttatcattg
ccgattttattagccaaaaaagatatcgccggacaagcacaaacgggaacaggtaagaca
ttagcttttttagtcgcgacatttaaccacctgttgactgaagctgctcctactgagcgt
aaaatcaatcagccacgagccattatcatggcgccaacacgtgagcttgccattcagatt
gctaaagatgccaacctattagcgaaacataccggccttaaagtcggcattgtttatggt
ggtgaaggttatgaagcacaacgaaaagtgcttgataaaggcatcgatatcttgattggt
actacaggtcgtatcatcgattacgttcgccaaggtgttattgacgtgagtgcgattcaa
gcggtagtgcttgatgaagcggatcgtatgtttgatttaggttttattaaagacattcgt
ttcttgtttagacgcatgcctgatgctaaatcacgtttgaatatgctgttttctgcaacg
ctttcaatgaaagtgcaagagttggcatatgatcatatgaacgagcctgaaaaagttgaa
atcgcgccgaatgagaaaacctctaagaacattaaagaggagatcttctatccatcgatg
gaagagaagatgccgttgctattgtctttgctcgaagaagattggccagaaaaagcaatt
gttttctcaaataccaaacatagctgtgaaaaagtatggtcatggcttgagggtgatgga
caccgagttggcttactgactggtgatgtaccacaaaagaagcgtttacgtattcttgaa
caatttaccagtggcgacatcgacgttttagtggcaacggacgtagcagctcgtggatta
cacattgctgatgtgtctcatgtatacaactatgacctgccagatgactgcgaagattat
gtacaccgtatcggtcgtacaggtcgagctggtcaaaaaggggtatcggttagctttgct
tgcgaagagtatgcgctgaacctgccagctattgagagttatattcaacactcaattccg
gtgacatcatacgacagtgaagctttgcttgatgatatccctgcgccaaaacgtatccat
cgcaaaccaagcagtcacagccgtaattctcgcgatcgtagtggctctcgtccacaaggc
ggccatcgtggtaatgcaccacgtcgtcacgataagacgcgtagacattcgtaa
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