Shewanella piezotolerans: swp_0483
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Entry
swp_0483 CDS
T00791
Name
(GenBank) GGDEF:EAL domain protein
KO
K18765
RNase E specificity factor CsrD
Organism
swp
Shewanella piezotolerans
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swp03019
]
swp_0483
Messenger RNA biogenesis [BR:
swp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
swp_0483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
USP8_interact
GGDEF_GdpP
Motif
Other DBs
NCBI-ProteinID:
ACJ27314
UniProt:
B8CI38
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All DBs
Position
503329..505245
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AA seq
638 aa
AA seq
DB search
MILTRILTKKLTSFWLMSLAGVAFICFITAMFSFFQLTYAFQQQKVSELENMLQQQFAVN
IAPEERWELNNWLPPLLHAYQAESFVLSKDKVTLFEYQQDNAQQAGVGYSSELEYGLKME
LVLPQPFNKHEVSAYEWMILVVGCIAVMLFVRFGFRWFSEQLNGIEDLAQRANLILTGQR
DKALAEKGHGRPRMINRAMTQLLLELYEAHKERARFDQFIRSNTFLDAETGIGNRLFLKN
RLDALSNSSGMMTPGVLYLFEMEDLDLLSRDIGEQELNEMLSQIIATINQILVSKANTIF
SRRSNNQFAVVVPQISQKEADQLAAKLLKASLSRIDSLIDTPDDFLHLGGAYFEVGDDKD
ALVEEAEQALRSAQFQGGSSWFMYDKGAVDGDLSKGSVRWRSFLENVLVSKRVFLFSQPV
VDSDLNAHHQEVSCRLRDTQGNLVRATLFLPMAIKCGLTPQIERQVIETVLFDLLPKQND
TSLKYSINLSLDTLTSRAFIRWLKTTLLEYRHLAPRIIFEVNEDILVHNQEVLTDPLDMI
NKMGAGVCVDRVGQQVVSTEYLQHYPISLIKLHRSIVSQIHLRAENQLFVRSLIAGLFRT
DVQVCAEGVEVFEEWQTLQILGVSAGQGSFFSEPVEEV
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgatactcactcgaattcttaccaagaaactcactagcttttggcttatgtccctagca
ggcgtcgcctttatctgttttatcactgctatgtttagttttttccagctgacctatgca
tttcagcaacaaaaagtctctgaacttgaaaacatgttgcaacagcaatttgcggtaaat
atcgcgcctgaagagcgctgggaacttaataattggttaccgcccttattgcatgcttat
caggctgagtcatttgtgcttagcaaagataaggtgacactgtttgaatatcagcaggat
aatgcacagcaagcgggtgtgggatacagcagtgaactggaatatggcttaaagatggaa
ctggtgttacctcaaccgtttaataagcatgaagtcagcgcttacgagtggatgattctt
gtggttggatgtattgctgtgatgctgtttgttcggtttggttttagatggttttcagag
caactcaacggcattgaagatttggctcaacgggcgaatctgatcttaactggtcagcgt
gataaagcactggctgagaaagggcatggtaggcctaggatgataaaccgtgctatgaca
cagttactgcttgagctttatgaagcgcataaagagcgtgcgagattcgatcagtttatt
cgctcgaatactttcttagatgccgagacgggtattggtaaccgtctgtttctgaaaaat
cgcttagatgcgctaagtaatagcagcggtatgatgacgccaggtgttttgtatctattt
gagatggaagatctagatctgttaagtcgagacataggtgagcaagagctcaatgaaatg
ctgtctcaaattattgctaccatcaaccaaatcctagtgagtaaagcgaacactatcttc
tcacgtcgctccaacaatcagtttgccgttgtggtgccacaaatctcacaaaaagaggcg
gaccaactggcggctaaattgctgaaagcaagcttaagccgaattgatagcctgattgat
actccagatgatttcctgcatttaggcggagcttattttgaagttggcgatgataaggat
gctttagttgaagaggctgagcaggcattacgttcagcgcagtttcagggtggtagtagc
tggtttatgtacgacaaaggcgccgttgatggtgacttatcaaaaggctctgtgcgttgg
cgcagctttttagaaaacgtattggtaagtaagagagtcttcttgttttctcaacccgta
gtcgacagtgatctaaatgcacatcaccaagaggtctcatgtcgtctacgtgatacccaa
ggtaatttggtccgtgcaacgctatttttacctatggcaataaagtgtggtttaacgcct
caaattgagagacaagttattgagactgtgttgtttgatctattgcctaaacaaaatgac
accagcctgaagtacagcattaacctaagtttggatacattgactagtcgtgcatttata
cgttggttgaaaactactttattagaatacaggcacttagctccgcggattatttttgaa
gtcaatgaggatatcttggtgcacaatcaagaggtattaactgaccccctggatatgatc
aacaagatgggcgctggagtctgtgttgaccgtgttgggcagcaagttgtaagcactgaa
tatttacagcactatcctatatcattgattaaattacatcgctctattgtcagtcaaata
cacttacgtgcagaaaaccaattgtttgttcgaagcttaatagcgggtctgtttcgtact
gacgttcaagtttgtgctgaaggagttgaagtttttgaagagtggcaaacattgcagatt
ttaggtgtgagtgccggacaaggcagtttttttagtgagcctgtagaagaagtctag
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