Shewanella piezotolerans: swp_1223
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Entry
swp_1223 CDS
T00791
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
swp
Shewanella piezotolerans
Pathway
swp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
swp_1223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swp03019
]
swp_1223
03016 Transfer RNA biogenesis [BR:
swp03016
]
swp_1223
Enzymes [BR:
swp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
swp_1223
Messenger RNA biogenesis [BR:
swp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
swp_1223
Transfer RNA biogenesis [BR:
swp03016
]
Prokaryotic type
tRNA degradation factors
swp_1223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
KH_KhpA-B
DUF6946
Motif
Other DBs
NCBI-ProteinID:
ACJ28017
UniProt:
B8CKH8
LinkDB
All DBs
Position
1231247..1233352
Genome browser
AA seq
701 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PEINPDIISMIGTSAALAISGLPFNGPLGVARVGYTNGEYVLNPDVTQLVDSELDLVVAG
TEGAVLMVESEAASLPEEVMLGGVVYGHEQQQVVINAISELKAEASKPAWDWTAPVQDQE
LVAKIKDLAEAGLTEAYQIEVKQDRYTQVGVIKSAAKEALLAENPEADLREIDGLLGSLE
KKVVRSRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERD
AQKVDSIMGEYTNRFMLHYNFPPYSVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKDIMQIALQQAYGARVHILNVMDQAI
GSHREDISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASSN
GEATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN
VSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAAPKAEAPAAE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatcgtaaagagttttgaatatggtcagcacacagttacattagaaactggt
gttatcgcacgtcaagcagacgctgctgttttagcaagtatgggtgatacaacagtcctt
gttactgttgtcggaaagaaagctgaagagccaggtcgtgactttttcccgctaaccgtt
aattaccaggaaaagacatacgctgctggtaagatccctggtggatttttcaaacgtgaa
ggtcgtccatctgaaagcgaaacattgattgcacgcctcattgaccgtccaattcgtcca
ctattcccaaatggcttcaagaatgaagttcaggtaattatcacagtagtttctgttgat
cctgaaatcaatcctgacattatttcgatgattggtacttctgctgcactagctatttct
ggtctgcctttcaacggcccactaggggttgcacgtgtcggttacacaaacggtgaatac
gttcttaacccagatgtcactcagcttgttgatagtgagctagatctagttgttgcgggt
actgaaggcgcggttctgatggttgaatcggaagcggcttctctacctgaagaagtgatg
cttggcggtgtggtttatggccatgaacaacagcaagttgttattaatgcgattagtgaa
ctaaaagctgaagctagcaagcctgcatgggattggactgctccagttcaagatcaagag
cttgtagctaagattaaagacctggctgaagcaggtcttactgaagcttatcaaatcgaa
gttaagcaagatcgttacactcaagttggcgtaattaaatctgctgctaaagaagcactt
ttggctgaaaacccagaagctgatttgcgcgaaatcgacggtctgcttggtagcttagag
aagaaagtcgttcgtagccgtatcattgcgggtaacccacgtattgatggtcgtgagcca
gatatggttcgtgcactaaacgtgatggctggcgtacttccacgtacacacggtagctca
ctgttcactcgtggcgaaactcaagcactagttacttgtactcttggtacagagcgtgat
gcacagaaagttgatagcatcatgggcgagtacacaaaccgctttatgctgcactataac
ttccctccgtactcagtgggtgaaactggttttgttggttcacctaagcgccgcgaaatt
ggtcatggtaagttagcatggcgtggtattaacgctgttatgccttcagctgaagagttc
ccgtacagcgttcgtgtagtatctgagatcactgaatcaaatggttcaagctcaatggct
tctgtatgtggtacttcacttgcgcttatggatgcaggtgtaccgattaaaacatcggtt
gcaggtatcgcaatgggtctagttaaagaaggcgacgacttcgttgttctttctgacatc
ctaggtgatgaagatcatcttggtgatatggactttaaagtagctggtactcgtgacggt
attactgctttgcagatggatatcaagattgaaggtatcactaaagacatcatgcagatt
gcactgcaacaagcctatggcgcgcgcgtacatattctaaatgtaatggaccaagccatt
ggttcacatcgtgaagatatctctgaccacgcaccacgtatcacaactcttaagattaac
cctgagaagatccgtgacgttattggtaaaggtggtgcaacaattcgtgcacttactgaa
gagactggcactacgattgagcttgaagatgacggcacagttaagattgcttcttcaaat
ggcgaagcaactaaagaagctattcgtcgtatcgaagagatcactgctgaagttgaagtt
ggaactgtttacaacggtaaagttgttcgtatcgtcgatttcggtgcattcgtgacaatt
cttcctggcaaagatggtctagttcatatttctcaaatcgctgaagagcgtgttgcaaat
gtgtctgactacctagaagttggccaagaagttaaagttaaagttatggaagttgaccgc
caaggtcgtgtgcgtctttctatgaaagaagctgcgccaaaagctgaagctcctgctgca
gaataa
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