Shewanella piezotolerans: swp_1246
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Entry
swp_1246 CDS
T00791
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
swp
Shewanella piezotolerans
Pathway
swp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
swp_1246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swp03019
]
swp_1246
Enzymes [BR:
swp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
swp_1246
Messenger RNA biogenesis [BR:
swp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
swp_1246
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ACJ28040
UniProt:
B8CKK1
LinkDB
All DBs
Position
1261327..1262595
Genome browser
AA seq
422 aa
AA seq
DB search
MRASSTTIFRYMQVSFSSLSLSDELLSLIKQKGYNEPTPIQTAAIPVILSGKDLMASAQT
GTGKTAAFTLPILQKLAMQSAGKETDSIRALILVPTRELAVQVNKSVTEYGVNTALKSMV
IYGGVSIDAQASSLAAGVDIVVATPGRLLDHLRRGSLSLMAIDTLVFDEADRMLDMGFMD
EINAILKQLPTERQTLLFSATFSDAIYRLSKKLLSKPVRIEVDKANSAADSVEQIVYAVD
SDRKAALISHLINKYHWQQVLIFSRKKQTADTITSKLVAAGVAAKAFHGDLSQGAREQVL
NDFKAGNIKALVATDVAARGLDIVELNYVVNYEIPFVAEDYIHRIGRTGRAGNSGKAITL
YSEDDARLLEELESLLDKRLPQQWLPGFEPDLTKMEVQPRKNGKAAQRQRAKKRALGSKG
KR
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcaagttcaacaacgatatttaggtatatgcaggtgtctttttcatctttatca
ttaagtgacgaattacttagcctcataaagcaaaaaggttataacgagcctacaccgatc
caaactgctgctattccggttattttaagtggcaaagatttaatggcgagcgctcaaact
ggcaccggaaaaactgcggcttttaccctaccaatattgcaaaagttggcgatgcagtct
gctggtaaagagactgatagtattcgtgcgctgatcttagttccgacgcgtgaactcgct
gttcaagtcaataaaagcgtcactgaatacggggttaataccgcgcttaagagcatggtg
atatatggcggcgttagtattgatgctcaggcaagctcccttgctgctggcgtcgatata
gtggttgctacccctggtaggttattggatcatcttcgccgaggttcattgtcattgatg
gcgattgacactttagtttttgatgaagctgacagaatgctggacatgggttttatggat
gagattaatgccattctaaagcagctaccaacggagcgacaaactttactgttttcggcg
accttttcagatgctatttaccgcttaagtaaaaaactactcagcaaacctgtacgcatt
gaagttgataaggccaatagcgctgcagacagtgtcgagcaaatagtttatgcggtagat
agtgatcgtaaggctgcgctaattagtcatctcattaacaaatatcactggcaacaagta
cttatttttagccgtaagaaacaaaccgccgatactattaccagtaaattagtcgcagca
ggagttgcagctaaagccttccatggcgatttaagtcaaggcgctagagagcaagtgctt
aatgattttaaggcgggcaatattaaagcgttagttgccacagatgtggctgcgcgaggg
cttgatattgtagagctcaattatgtggttaactatgagatcccctttgtagctgaagac
tatatccatcgtatcggtcgtacggggagggcgggtaactcgggtaaagccattacactc
tacagtgaagatgatgctcgtttgctcgaagagctagaatcattgctggataaacgcctt
ccacagcaatggttaccaggctttgagcccgatttaaccaaaatggaagtgcagccgcgc
aaaaatggtaaagcagcgcaaaggcaacgagctaaaaaacgggctttgggttcaaaaggg
aagcgttaa
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