Shewanella piezotolerans: swp_1838
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Entry
swp_1838 CDS
T00791
Name
(GenBank) Helicase:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
swp
Shewanella piezotolerans
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
swp03400
]
swp_1838
DNA repair and recombination proteins [BR:
swp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
swp_1838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_30
Zn_ribbon_3
AAA
AAA_16
SLFN-g3_helicase
AAA_22
zf-tcix
DZR
SNF2-rel_dom
DUF7577
T1R_D3-like
UPF0547
Motif
Other DBs
NCBI-ProteinID:
ACJ28601
UniProt:
B8CLF0
LinkDB
All DBs
Position
complement(1887914..1889659)
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AA seq
581 aa
AA seq
DB search
MQLRDYQQQSVDAAINHFKSTSDSAVLVLPTGAGKSIVIAELARIAKGRVLVLTHVKELV
AQNAEKVGLLTDKASIYSAGLNQKSTRGKTVVASIQSAVKQPTQFNEPYSLVIIDECHRV
SPDKDSQYQQLLAHLKSKNRNIRLLGLTATPYRLDLGWIYRHHYHGKIGNTDKPVFEKCI
FELPMRPLIKQGFLSQPKMFDGLSAQYDFSELTASPTGQYNESEVDSLLNHCGRATTAIV
KQLIALAKHRQGVIIFAATVKHAEEIMAKLEGYEPALVTAKTSREDRDLLISSFKAKQIK
FLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRIDSGKSECLIIDYAANGYD
LFYPEVGQPKPNSKCKPVQVHCPVCDFANIFWGLTDNDGDIIEHFGRRCQALIETTHGKQ
QCDFRFRSKACPNCGEENDIAAKVCNHCQAVLVDPDKRLKEVLQQKHHHLFKCQNMLLEP
DGDRLIVRYIDIEGNDFCRYFKMQTAAQIRAVFALFIYPHSKTPGMKHKKYRSAQELAND
ADSFRKPDLLLLKKGKKGWDLLESIFDYQGRYQTEPSNIEQ
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
gtgcaacttcgagattatcagcaacaatcggttgatgctgccatcaaccactttaagtca
acaagcgattctgctgtccttgtcctccccacgggagcaggtaaaagcatcgtaattgct
gaacttgcccgaattgccaaaggccgtgtgttagtgctcacccacgtaaaggaattggtc
gcacagaatgctgaaaaggtcggcttgctaactgacaaagcatctatttattctgcggga
ttaaatcaaaaatcgacccgcggtaagaccgtggttgctagtattcaatcagccgtaaag
cagccaacgcaatttaatgagccttatagcctagttattattgatgagtgtcaccgcgtc
agtccggataaagatagtcaatatcagcaattattagcccacttaaagtcaaagaaccgc
aatattaggctattaggattgacggcaaccccataccgtttagatttagggtggatttat
cgtcatcactaccacgggaaaataggtaataccgataagcctgtattcgaaaaatgcatc
ttcgaactgcccatgcgccccttgatcaaacaaggctttctaagccaaccaaaaatgttt
gatgggcttagcgcccaatatgactttagcgagttaacagcatcgcctacaggtcaatac
aacgaatcagaggttgattccttacttaaccattgtggccgtgctactaccgctatcgtt
aaacaactcattgcactcgctaaacatcgccaaggggtaattatctttgccgctacggtt
aagcacgccgaagagataatggcaaagcttgaagggtatgaacctgcactggtcacagcc
aagacttcgcgtgaagatagagatctgctcatctcatccttcaaagctaagcagataaaa
ttcttggttaacgtagccgtgctaaccaccggctttgacgcccctcacgtcgatctaatc
gctattttacgtccaacagcctcagtgagcctatttcagcaaatggtaggccgtggtttg
cggattgattcaggtaaatctgaatgccttattattgattatgcagccaatggctacgac
cttttctatccagaagttggtcaacctaagcccaatagcaaatgtaagcctgtgcaagtg
cattgccctgtttgcgacttcgccaacatcttctgggggctaaccgataatgacggagat
attatcgaacattttggcagacgctgccaagcacttatagaaacgactcacggtaaacaa
cagtgtgactttaggtttcgctccaaagcttgccccaattgtggagaagagaacgatata
gcggcaaaagtgtgtaaccattgtcaagcagtgttggtcgaccccgataagcgccttaaa
gaagtgttacagcaaaagcaccaccacctttttaagtgtcaaaacatgctgcttgaacca
gatggcgatcgtttaatcgtccgctacatcgatattgaaggcaatgatttttgtcgctac
tttaaaatgcaaactgcggcgcaaataagggctgtatttgcgctgtttatttaccctcat
agtaaaacgccaggcatgaaacataaaaagtatcgctctgctcaggagcttgctaatgat
gccgacagctttagaaagccagatctattactacttaagaaaggcaaaaaaggctgggat
ctgcttgagtccatttttgactaccaaggccgctatcaaaccgagccgagcaatatcgag
cagtaa
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