Shewanella piezotolerans: swp_1976
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Entry
swp_1976 CDS
T00791
Name
(GenBank) Exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
swp
Shewanella piezotolerans
Pathway
swp03030
DNA replication
swp03430
Mismatch repair
swp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
swp_1976
03430 Mismatch repair
swp_1976
03440 Homologous recombination
swp_1976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
swp03032
]
swp_1976
03400 DNA repair and recombination proteins [BR:
swp03400
]
swp_1976
Enzymes [BR:
swp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
swp_1976
DNA replication proteins [BR:
swp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
swp_1976
DNA repair and recombination proteins [BR:
swp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
swp_1976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
WD40_Apc4_C_fungal
Motif
Other DBs
NCBI-ProteinID:
ACJ28733
UniProt:
B8CN99
LinkDB
All DBs
Position
2045869..2046546
Genome browser
AA seq
225 aa
AA seq
DB search
MKRFYLKNQLRLKAFRAADGVIADYYRALTCAISIPLADIPLMAIDLEMTGLNVQFDQIL
SIGMVPIQNGMLQLKDADYRLVSIEGSVGDSAAIHGIVDGQLETAISANEAMHWFLEKTK
GHVLIAHHAPLDLCFLKAEIFRCFGEKMTFVSIDTMSLERARILRQHEVIKEGSLRLDAC
RSRYGLPIYAAHNAAVDALSCGELLLAQMASIAGAEELTLSDLLR
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcgtttttatttaaaaaaccagctcagattgaaggcgtttagagctgctgatggc
gttattgctgactactaccgagcgctaacttgtgccatctctatacctcttgcggatatt
ccattaatggcaatcgatttggaaatgactgggctaaacgttcagtttgatcaaatcttg
agtatcggtatggtgcctattcaaaatggtatgcttcagttgaaggatgctgattataga
ttggttagcatagaaggaagtgtaggtgatagtgcagcaatacacggaattgtagatggt
cagttggaaaccgccatatcggctaatgaggcaatgcattggttcttagaaaagaccaaa
ggtcatgtattaattgcacatcatgcaccgcttgacctgtgctttttaaaagcagaaatc
tttcgttgttttggtgaaaaaatgacatttgtatcaattgatactatgtctttagagcga
gctagaatattacggcagcatgaagtgattaaagaaggttccttgaggctcgacgcttgt
cggagccgatatggtttacctatttatgccgctcataatgcggcagttgacgcattatct
tgtggagaattgttattggcccagatggcgagtattgcgggggctgaagagcttacgttg
tcagatttgttacgttag
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