Shewanella piezotolerans: swp_2004
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Entry
swp_2004 CDS
T00791
Name
(GenBank) DNA-directed RNA polymerase beta' chain (RNAP beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
swp
Shewanella piezotolerans
Pathway
swp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
swp_2004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
swp03021
]
swp_2004
03400 DNA repair and recombination proteins [BR:
swp03400
]
swp_2004
Enzymes [BR:
swp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
swp_2004
Transcription machinery [BR:
swp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
swp_2004
DNA repair and recombination proteins [BR:
swp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
swp_2004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACJ28760
UniProt:
B8CNC6
LinkDB
All DBs
Position
2082186..2086400
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIELEKEIEMMREELPSINSETRRKKITKRLKLIEAFFQSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVPEVWDVLDDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECVNGKGEGMAFESVAEAEKAYRTG
AAELHARVKVRITETKTDEAGEKVKTRRIVDTTVGRALLSLILPKGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFHFATVSGASVGINDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMDNLSSETVINRDGEEEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVSQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEEDCGTFEGLTMKPLIEGGDVVEPLRERVL
GRVVAQDVFKPGTEEVLIPRNTLLDEAWCDTVEDNSIDEMIVRSVISCDTDFGVCAACYG
RDLARGHIINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGTLKL
HNAKHVTNSEGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEDAPVAAGEIIANW
DPHTHPIITEVAGSTKFVDMIEGVTMTRQTDELTGLSSIVVLDVAQRPTAGKEMRPMIRL
VAADGGDLMIPGTEVPAQYFLPGNAIVNLDDNAPINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEVSGTISFGKETKGKRRLVITPAEGGDHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCEIANAGDSEFLAGEQAEVSRVKIANRELEAQGKQPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDKLRGLKENVIVGRLIPAGTGYSYHQKRAEAAVKPAAEE
APAISASEAEQNLADLLNLAGSSD
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttgaaggtatc
aagatcggcctagcgtcgcctgacttgatccgctcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtacattcaaacctgaacgtgaaggtctgttctgtgcgcgt
atttttggtccagtaaaagattacgaatgtttatgcggtaagtataagcgtcttaagcac
cgtggtgtgatctgtgaaaagtgtggcgttgaagttacacagactaaagtacgtcgtgag
cgtatgggtcacattgatcttgcaagcccagtagcacacatctggttcttgaagtcactg
ccgtctcgtatcggtttgatgctagacatgactctacgtgatatcgaacgtgttctttac
ttcgaatctttcgtggtgatcgagcctggcatgaccagtcttgaacgcggccaaatgttg
acagaagaaaactatctggatgcattggaagagtacggtgatgaattcgaagctaagatg
ggtgcagaagcagttcttgaattgctacgtgctatcgagcttgagaaagaaattgaaatg
atgcgcgaagaattgccatctatcaattctgagactcgtcgtaagaagatcactaagcgt
cttaagcttattgaggcattcttccaatcaggcaacaagcctgagtggatgatccttaaa
gtgctaccggttctgccacctgatctacgtcctctagtaccactagatggcggacgtttt
gctacgtctgatttgaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtctaaag
cgtctgttagacctagctgctccagatatcatcgtacgtaacgaaaagcgtatgctgcaa
gaatctgttgatgcgctattggataacggtcgtcgtggtcgtgctattaccggttctaac
aagcgtccgcttaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctaggtaagcgtgttgattactctggtcgttcggttattaccgtaggtcctacg
cttcgcttacatcagtgtggtcttcctaagaagatggcacttgagctatttaaaccattc
atctacggcaaactagaaggtcgtggtttagcgacaactattaaagccgctaagaagatg
gttgagcgtgaagttcctgaagtatgggacgttcttgacgatgttattcgtgaacaccca
gtgatgcttaaccgtgcaccaacactgcacagactaggtatccaggcatttgagccagta
ctaatcgaaggtaaagcgattcagcttcatccattggtttgtgcggcatacaacgccgac
ttcgatggtgaccaaatggctgttcacgtgccgctaacgctggaagctcagctagaagca
cgttcactaatgatgtctaccaacaacatcctttcacctgcaaacggtgaaccggtgatt
acaccttctcaggacgttgtattgggtctttactacactagccgcgaatgtgtaaacggc
aagggtgaaggcatggcatttgaatcagtcgcggaagctgaaaaagcttaccgtactggt
gctgccgaattgcatgctcgcgttaaggttcgtattaccgaaaccaagactgacgaagca
ggcgaaaaagttaagactcgtcgtatcgtagatactacagttggtcgtgcattattgtca
ttgatcctgccaaaaggcttatcgtttgatctggttaaccagaacatgggtaagaagcag
atctctaagctattgaacacttgttaccgtcaactaggtcttaaagataccgttatcttt
gctgaccaattgatgtacaccggtttccattttgcaactgtgtcaggtgcctctgttggt
atcaacgacatggttattccagatgagaaatacacgctagttgctgatgctgaagcggaa
gttcttgaaattcaagagcagttccagtcaggtctagtaacagctggtgagcgttacaac
aaggtcatcgatatctgggcaagcgccaacgaaaaagtgtctaaagcgatgatggacaac
ttgtcttcagaaactgtcattaaccgtgatggagaagaagagaagcaagagtcattcaac
agtatctacatgatggccgattcgggcgctcgtggtagtgcggcacagattcgtcagcta
gcgggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacgccaattacc
gctaacttccgtgaaggtctaaacgtatctcagtactttatttctactcacggtgcgcgt
aaaggtcttgcggatacggcattgaagacagctaactctggttacctgactcgtcgtcta
gttgacgttgcacaagatttagttgtgattgaagaagactgtggcacgtttgaaggtcta
acaatgaaaccgcttattgaaggtggtgatgttgttgagccgttacgtgaacgtgttctt
ggtcgtgtggttgcacaagacgtattcaagcctggtactgaagaagtgcttatcccacgt
aacactctgcttgatgaagcatggtgtgacacggtagaagataactctatcgatgagatg
attgttcgctcagtaattagctgtgacacagactttggtgtgtgtgctgcttgttatggt
cgtgatttggctcgtggtcatatcatcaaccaaggtgaagcgattggtgttgtagctgct
cagtcaattggtgagccaggtacacagcttacgatgcgtaccttccacattggtggtgcg
gcatctcgagcgtcagctgagaacaacgttcaagttaagaacgcgggcactcttaagcta
cacaatgctaagcatgtaaccaacagcgaaggtaaactggttatcgtatctcgttcatct
gagctagccatcatcgatgagttaggtcgtgaaaaagagcgttataaggttccttacggt
acggttctagaaaaactagaagacgcacctgtagctgctggtgagattatcgctaactgg
gatcctcatactcacccgattatcactgaagtggcgggtagtactaagttcgtagatatg
attgaaggtgtcactatgacacgtcaaacggacgaactaacgggtctttcatctatcgta
gtattagatgttgcacaacgtccaacagcgggtaaagagatgcgtcctatgatccgtctt
gttgctgctgatggcggtgacttgatgattcctggtactgaagtaccagcgcaatacttc
ttgcctggcaacgcgattgttaaccttgacgataacgctccaattaacgttggtgatgca
ttagcacgtattcctcaagaatcttctaagactcgcgatattaccggtggtctgccacgc
gttgctgacttattcgaagcgcgtaagccaaaagagcctgctattcttgctgaagtatcg
ggtactatctcgttcggtaaggaaaccaaaggtaagcgtcgtctagtgattacacctgct
gaaggtggtgatcattacgaagagatgattcctaagtggcgtaaccttaacgtgttcgaa
ggtgaaaaagttgaacgcggtgaagttattgctgatggtccagaagcagcgcacgacatt
ctacgactacgtggtatccacaatgtggctaactacatcgtgaatgaagtacaggatgtt
taccgtctacagggcgtgaagatcaacgataagcacattgaggtgattattcgccagatg
ctgcgtaagtgtgagatcgctaacgctggtgacagtgaattcctagcgggtgagcaagct
gaagtatcacgtgtgaagatcgctaaccgcgaacttgaagcacaaggtaagcagccagcg
acattcgagcgtgaacttcttggtattaccaaggcgtctcttgcgactgaatcgttcatc
tctgcagcatcgttccaggagaccactcgtgttcttactgaagcagctgttggcggtaag
agcgataagctacgcggtctgaaagagaacgtaattgtgggtcgtttgatccctgctggt
acaggttactcttaccaccagaagcgtgctgaagcggctgttaaaccagctgctgaagaa
gcaccagcaattagcgcgagcgaagctgagcagaaccttgctgatctactaaatcttgct
ggaagttctgattaa
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integrated database retrieval system
