Shewanella piezotolerans: swp_3116
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Entry
swp_3116 CDS
T00791
Name
(GenBank) tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
swp
Shewanella piezotolerans
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
swp03016
]
swp_3116
Enzymes [BR:
swp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
swp_3116
Transfer RNA biogenesis [BR:
swp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
swp_3116
Prokaryotic type
swp_3116
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
ACJ29828
UniProt:
B8CPW5
LinkDB
All DBs
Position
complement(3264622..3265407)
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AA seq
261 aa
AA seq
DB search
MRVALGIEYDGSRYYGWQRQLDVDSVQGQLEKALSKVANEPITVQCAGRTDTGVHGTGQV
VHFDTNAIRKETAWTLGVNVNLPDDIAVRWVKVVDEEFHARFSATARRYRYMIYNHQLRP
GILRSGVSHYRGNIDEDKMHQAAQLFVGEHDFTSFRALQCQSKTPFREIHEVNVTRQGMY
ICVDIKANAFLHHMVRNIVGTLLEIGKGNQPKEWVNTLLALKDRSKAAATAQPNGLYLVD
VTYPEHFQLPKLALGPLFMLD
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgcgggttgcgttaggtatagagtacgatggaagtcgctattatggttggcagcgccag
cttgatgtcgactctgtgcaagggcagttggaaaaagccctctctaaagttgccaatgag
ccaatcactgtgcaatgtgctggcagaaccgatactggtgtgcatggtactgggcaagtg
gttcactttgataccaatgctattcgaaaagagaccgcttggacacttggcgtcaatgtc
aatttgcccgacgatattgccgttcgttgggtcaaagtcgtcgatgaggagtttcatgct
cgtttttcagcgaccgcaagacgctaccgttatatgatctataaccatcaattacggcct
ggtattttacgtagtggcgtgagccattatcgcggcaatattgatgaagataaaatgcat
caagctgcgcagctatttgttggcgaacacgactttaccagctttagagcattgcaatgt
cagtctaaaaccccttttcgtgaaatacatgaagtcaatgttacgcgtcagggaatgtat
atctgtgttgatattaaagccaatgcctttctacatcatatggtgcgtaatattgtcggt
accttacttgaaatcggtaagggtaatcagccaaaggaatgggttaatacattattagca
cttaaagacagatcaaaagcagctgctacagcgcagccaaatggtttgtacttggttgat
gttacttaccctgagcattttcaattgcctaagctagctttaggtccactgtttatgttg
gattaa
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