Shewanella piezotolerans: swp_3506
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Entry
swp_3506 CDS
T00791
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
swp
Shewanella piezotolerans
Pathway
swp03030
DNA replication
swp03430
Mismatch repair
swp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
swp_3506
03430 Mismatch repair
swp_3506
03440 Homologous recombination
swp_3506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
swp03032
]
swp_3506
03400 DNA repair and recombination proteins [BR:
swp03400
]
swp_3506
Enzymes [BR:
swp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
swp_3506
DNA replication proteins [BR:
swp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
swp_3506
DNA repair and recombination proteins [BR:
swp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
swp_3506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
DUF655
Aldose_epim
Motif
Other DBs
NCBI-ProteinID:
ACJ30200
UniProt:
B8CQ70
LinkDB
All DBs
Position
complement(3707774..3711244)
Genome browser
AA seq
1156 aa
AA seq
DB search
MSDPLFVHLRVHSDFSMSDGLSKVKPILAKVSELGMPAVALTDQTNMCGLVKFYGGCHGA
GIKPIIGTEFWVQVPGVDELCSITAIAMNNEGYSSLTLLISDAYLRGHIDDRAVIDHEWL
AKYNDGLILLSGGRHGDVGRALLKDNKAQVDSLIEFYQTHFPDRYYLELLRTGRPDEERY
LHMAVELAQAKDLPVVATNQVVFNKPEQFEAHEIRVAISDGFTLADPRRPKKYSDQQYFK
SSEEMCELFEDIPEAIQNTVEIAKRCNVTVRLNEYFLPNFPTGDLTIEDFLVDVSEKGLE
ERLEFLFPDPEVRAEKRPEYDERLDIELKVINEMGFPGYFLIVMEFIQWGKDNDIPIGPG
RGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVADL
YGRDAVSQIITFGTMAAKAVIRDVGRVQGHPYGFVDRISKMIPAEPGMTLAKAFEVEPAL
QESYDGSEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKITDFSPIYCDSEGLNPVTQF
DKNDVETAGLVKFDFLGLRTLTIIDWALQMVNAVKDKNGEDRVRIESISLTDPKCFKLLQ
RYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREEV
SYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMA
KQRGTFEEGSIKNGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPSQ
FMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFRFTVDDDLNIVYGIGAVKGV
GEGPVDSILEARKDGPFTDLFDFCARIDLKKLNRRVIEKLICAGALDNLGPHRAALVATL
PEAIRAADQHAKAEAIGQHDMFGLLNNEPEDDKQQFVDCTPWPDKVWLEGERDTLGLYLT
GHPINQYLKELKHYTSGRLKDVHPTERGKTVKAAGLVVATRVMMTKRGAKMGLVTLDDKS
ARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMTARNIIDMGEARSHFANA
VEVDLQSTEVDGDWLNRFQAAVEPWKNGAVPVLINYAQPETRAQFALGDEWRVNPTDDLM
LALESLTGSNKVRIVF
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcctttatttgtgcatttgcgcgtccatagtgacttttcaatgtctgatggg
ctgtccaaggttaaacctattcttgctaaagtgagcgagcttgggatgcctgcagtggcg
ttgacggatcagactaatatgtgtggactggtaaaattttacggcggctgtcatggtgcc
ggaataaaacccatcatcggcactgagttttgggtacaagtgccgggcgtcgatgagctt
tgttctattactgcaattgcaatgaataatgaaggttattcgagcttaacgctactgatc
agtgatgcttatcttcgcggccatattgatgatagagcagtgattgatcatgagtggtta
gctaagtataacgacggtttgattttactctctggtggacgccatggtgatgttggtcga
gcgttactaaaagacaacaaggctcaagttgattccctaattgaattttatcaaacacac
tttcctgaccgttattacctagaattgttacgcaccggtcgtccagatgaagagcgttac
ttgcatatggctgtggagttagcacaggcaaaggatttacctgtcgttgctaccaaccaa
gtggtgtttaataaacctgaacagtttgaagcccatgaaattcgggtggcgatctccgat
ggttttacgctagccgatcctcgcagacctaaaaaatacagtgatcagcagtattttaag
agtagtgaagagatgtgcgaattgttcgaggatattccagaagcaattcaaaacaccgtt
gagatcgccaagcgttgtaacgttactgtgcgtttgaatgaatatttcctgcctaacttt
cctactggcgatttgaccattgaagactttttggtcgatgtttctgaaaaaggacttgag
gaacgtttagagtttttgtttcctgatccagaagtaagagctgaaaaacgaccagaatac
gatgaacgtttagatattgaacttaaagttattaacgagatgggtttccctggctacttc
ctgattgtcatggagtttattcaatggggtaaagataatgatatccctattggccctggt
cgaggttcgggagcggggtcgctagtggcctatgctctcaaaattaccgatcttgatcca
ttagagtatgatctactattcgaacgatttcttaaccctgagcgtgtatctatgccggat
ttcgacgtcgatttctgtatggatcgtcgagatgaggttattgaccacgtggccgatctt
tacggccgtgatgcggtatcgcagattattaccttcggtaccatggcggctaaagcggta
atacgagatgtgggtcgtgtgcaaggacacccttacggttttgtcgataggatctctaag
atgatccctgctgagcctggcatgacgctggctaaagcatttgaagtcgaacccgctttg
caggagtcctacgatggcagcgaggaggttaaagaccttatcgatatgtgtcggattttg
gaaggtgttacccgtaacgctggtaagcacgccggtggtgttgttatcgcgccgaccaaa
attactgatttctcccctatttactgtgactccgaagggcttaaccctgttactcagttc
gataaaaacgatgtagaaaccgcgggtctggttaagttcgatttcttagggttaagaacg
ctcaccattattgattgggcgttgcagatggtgaacgccgttaaagacaagaatggcgaa
gatcgcgtgcgaattgagtctatttcgctgacagatcctaagtgttttaagttattacaa
cgctacgaaacgacagcggtattccagcttgaatcccgtggtatgaaggatttgattaag
cgtcttcagcctgactgctttgaagatatgattgcattggtagcattgtttagacccggc
cctttgcagtcaggcatggtagataacttcattgagcgtaagcatggtcgcgaagaagtc
tcttaccctgatgctgagtaccagcacgaatcacttaaagaattactgtcgccaacttac
ggtattattttatatcaagagcaagtgatgcaaattgctcaggtattggcgggttatact
ttgggcggcgccgatatgttgcgtcgagcgatgggtaagaaaaagcctgaggagatggct
aagcagcgcggtactttcgaagagggatcgattaaaaacggcgttgatggtccattgtcg
atgaagatcttcgatctggtagaaaagtttgcgggttacggttttaacaaatcacactct
gcagcctacgcgttggtgtcataccagactctttggttaaagactcattatccgtcgcag
tttatggcagcggttatgtctgcggatatggataataccgacaagatcgtgactttggtt
gatgagtgcgaacgtatgggattaccgctgatcccacctgatgtgaataagggcttgttt
agattcactgtcgatgacgatcttaatattgtttacggtattggtgcggttaaaggggtg
ggtgaaggtcctgttgactcgatactagaggccagaaaagatggtccatttactgactta
tttgatttttgtgcccgaattgatcttaaaaaacttaatcgtcgcgtgattgaaaagctc
atttgcgcgggagcattggacaatcttggcccacaccgagccgcgttggtagccacgcta
ccagaagctattcgcgcagcagaccaacatgctaaagcagaggcaattggtcagcatgat
atgtttggtttattaaataatgagccagaagatgacaaacagcagttcgttgattgtaca
ccgtggccagataaagtttggttagagggagagcgggacacactcggtttgtatttaact
ggccacccgattaatcagtatctcaaagaacttaagcattacacatctgggcgcctgaaa
gatgtgcacccaactgaacgcggaaaaaccgtgaaagcggcagggcttgtggtcgccact
cgggttatgatgaccaagcgtggcgctaaaatgggcttagtgaccttggatgataaaagt
gcacgcttagaggtaatgttatttaccgaagcgttcgagaaatttaaccacttgcttgaa
aaagaccgtattttgattattgaaggcgaagtcagtttcgatgacttctccggcggtaac
cgcatgactgcacgtaacattattgatatgggcgaagcgcgcagccactttgcaaatgcg
gttgaagttgacttgcagtcaacagaggttgatggagactggttaaaccgttttcaggca
gcagttgagccatggaaaaatggcgctgtaccagtgttaatcaattacgcccagccagaa
actagggcgcagtttgcactaggtgatgaatggcgggtgaacccaaccgatgatttgatg
ttggcgcttgagtcattaacaggctcaaacaaagttcggattgtcttttaa
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