Shewanella piezotolerans: swp_3564
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Entry
swp_3564 CDS
T00791
Name
(GenBank) Helicase, DEAD box
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
swp
Shewanella piezotolerans
Pathway
swp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
swp_3564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swp03019
]
swp_3564
Enzymes [BR:
swp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
swp_3564
Messenger RNA biogenesis [BR:
swp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
swp_3564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACJ30256
UniProt:
B8CQC6
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All DBs
Position
3783646..3784986
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AA seq
446 aa
AA seq
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MPFSKLGLSNPIVTAVTEQGYTSPTPIQAKSIPVILSGRNLIAAAQTGTGKTASFVLPIL
QLLSQSQTQRKKRIRALILTPTRELAVQVEANIALYGKHLALTSMAMYGGVDAKPQRQRL
LDGVDILVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDIDKIMDKLPADRQ
SLLFSATLSHQVKALAKTAIDKPVEISVIANTDSKPKIEQWLTTVDKDKKSALLSHLIKE
NSWHQALIFIETKQGAAKLVSQLEKRGINAECIHGGRSQEVREKILADFKAGEIGLLIAT
GVAARGLDIDELPLVINYDLPYPADDYIHRIGRTGRAGANGEAVSLVSKDDFKNLCMIES
RLGHLLERREIEGFAPRKEVPISVLNFKPKFKKMTEKTKDNEQSKSKPSLGTSPSKKRND
NKSANNRSKSNLRDSGNKLPPNPWNT
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgccgttttctaagcttggattaagcaatccaatcgttaccgctgtaaccgaacaaggt
tacaccagccctactccaatccaagcgaagagcattccggtgatcttaagcgggcgaaac
ttgatcgccgcagcgcaaacaggtacaggtaaaacagcaagctttgtattgcccatctta
cagctcctaagtcaatcgcagacccaacgtaaaaaacgaattagagcattaatcttaacg
cccactcgcgagcttgcagtgcaggttgaagccaacattgcactttacggtaaacattta
gcgctgacttcaatggcaatgtatggtggcgtggatgccaagccacaacgtcaacgtctg
ctagacggggtcgacatattagtcgcgacaccaggccgtctgctggacatgtatacccag
cgagcaattcattttgatgagttagatattctggtgcttgatgaagccgatagaatgctc
gatatgggctttatcgaagacattgataaaatcatggataagctgccagcagacagacaa
agcttactgttttcagcaaccctatcacatcaagtgaaagccttagccaaaacagcgatt
gataaacctgttgaaatatcagttatcgccaatactgattccaaacctaaaattgaacaa
tggttaaccacagtagacaaagataaaaaatcggcgttattgagccacctgattaaggaa
aacagttggcatcaggcgctgatctttattgaaaccaagcaaggcgcggcaaaacttgta
agccagctcgaaaagcgtggcattaacgctgaatgtatccatggtggtagaagccaagag
gttagagagaagatccttgctgactttaaggctggagaaattggactattaatagcgact
ggtgttgctgctcgaggtctcgatatcgatgaattacctttggtgattaactatgatcta
ccctaccccgccgatgactatatccatcgcattggtcgaacaggtcgtgcaggagccaat
ggtgaagcggtatctttagtttctaaagatgatttcaaaaacctgtgcatgattgaaagt
cgcctagggcatctgcttgaaagaagagagatagaaggttttgcccctcgtaaagaggta
ccgatatcagtattgaactttaagcctaaatttaaaaagatgactgagaaaaccaaggat
aatgaacagtccaaatccaaacctagcttaggaacctcaccatctaagaagcgcaatgat
aataaaagcgccaacaaccggtccaaaagtaatcttcgcgatagcggtaataagctacct
cctaacccttggaacacctaa
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