Shewanella piezotolerans: swp_5074
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Entry
swp_5074 CDS
T00791
Name
(GenBank) DNA polymerase A
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
swp
Shewanella piezotolerans
Pathway
swp03030
DNA replication
swp03410
Base excision repair
swp03420
Nucleotide excision repair
swp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
swp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
swp_5074
03410 Base excision repair
swp_5074
03420 Nucleotide excision repair
swp_5074
03440 Homologous recombination
swp_5074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
swp03032
]
swp_5074
03400 DNA repair and recombination proteins [BR:
swp03400
]
swp_5074
Enzymes [BR:
swp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
swp_5074
DNA replication proteins [BR:
swp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
swp_5074
DNA repair and recombination proteins [BR:
swp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
swp_5074
NER (nucleotide excision repair)
GGR (global genome repair) factors
swp_5074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WHD_BrxR
Prok-E2_E
Motif
Other DBs
NCBI-ProteinID:
ACJ31688
UniProt:
B8CVL2
LinkDB
All DBs
Position
5293977..5296727
Genome browser
AA seq
916 aa
AA seq
DB search
MPKIADNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPSQMAV
VFDAKGKTFRNDMYSEYKAQRPPMPDDLRGQIAPLHQIIKALGLPLVCIPGVEADDVIGT
IATQASKEGRAVLISTGDKDMAQLVDDNVTLINTMTNTVMGPAEVTEKFGVGPELIIDLL
ALQGDKADNIPGLPGVGEKTALAMLLGVGGVDNILAAPEKMPELGFRGSKTMPAKIAEHG
DMLKLSYELATIKLDVELEQDWRTMDIEPANKDELVKCYGEMEFKRWLAEVLDNKSTATA
DEDNDEAVVKQDIEAKYDTILSVEQLDSWIATLSKADLIAIDTETTSLNYMEAELVGISF
AVEAGKAAYLPLSHDYVDAPEQLDKALVFEKLTPLLENEAIKKVGQNLKYDISIFANAGI
KLKGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQLTFNQIPLET
AAPYAAEDADITLRLHQHLWPRLEKLPQLASVFTDIELPLIDILSTIERQGVLIDSMLLG
QQSEELARKIDDLQTKAHEIAGQPFNLASPKQLQELFFEKLGYPIIKKTPKGAPSTAEEV
LVELALDYPLPKIILEHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANAATGRLSSSE
PNLQNIPIRTEEGRRIRHAFIAPEGRKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDI
HKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRAEAQRYIDTYFK
RYPGVLNYMEETRAIATDLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAA
DIIKKAMINVAKWIETETNGEITMIMQVHDELVFEVDADKADSLQVKICELMAAAATLDV
ELLAEAGIGDNWEQAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaattgccgacaaccctttagtccttgtggatggatcctcatacctttaccgc
gcctattatgctccgccacatttgactaactctaaaggtgaagcaacgggtgctgtatat
ggcgtgataaacatgcttcgcagtctgttaaatcaatataaacctagccaaatggcagtt
gtatttgatgcaaaaggcaaaacattccgtaacgacatgtattctgaatacaaggcgcag
cgcccaccaatgcctgatgatctccgcggccaaattgcaccactgcatcaaatcattaaa
gccctcggtttaccactagtgtgtattccaggtgtggaagctgatgacgtcataggtact
attgccacccaagccagcaaagagggacgtgctgtactcattagcaccggtgataaagat
atggctcagttggttgacgacaacgtcactctaatcaataccatgaccaacacggtaatg
gggcctgcagaggtaacagagaaatttggagtcggcccagagctgatcatcgacttactt
gcactacaaggtgataaggccgataacatacccggtctaccaggtgtgggcgagaagacg
gcgctagcaatgctactcggtgttggtggggttgataatattcttgccgcgcctgaaaag
atgccagaactgggattccgtggttcgaaaaccatgccagctaaaattgccgaacatggt
gatatgctcaaactgagctatgagctcgccaccattaagcttgatgtagaacttgagcaa
gattggcgcaccatggatattgaaccagctaataaagatgagctagttaaatgctatggc
gaaatggagtttaagcgttggttagcggaggtactagataacaaatccaccgccaccgca
gatgaagacaacgatgaagccgtcgttaagcaagatattgaagccaagtacgacactatt
ttatctgttgagcaactcgacagctggattgcaacacttagtaaagcagatctcattgcc
attgatactgagaccacaagtctcaactacatggaagctgaactggttgggatatcattt
gcagtagaagcaggcaaagccgcctacctgcccttgtcccatgactatgtagatgcacca
gagcaacttgataaagcattggtttttgagaaactaacaccattgttagaaaatgaagca
attaaaaaggttggtcaaaaccttaaatacgatatcagcatttttgctaatgccggtatt
aagctcaagggtgtacagttcgataccatgcttgaatcgtacgtgtttaactctgtcgca
tcaaaacacaatatggatgacttagcgcttaaatatcttggccataaaaatattagtttt
gaagagattgccggtaaaggggctaaacagctcactttcaaccagatcccactggaaacc
gcagcgccttatgcggctgaagacgcagatatcaccctaagactacatcaacacttgtgg
cctcgattagagaagctaccccagcttgccagtgtgtttaccgatatagaactaccgctg
atcgatattctatcaacaattgagcgtcagggcgtcctcattgatagcatgttgttaggc
cagcaaagcgaagagcttgcgcgtaaaatagatgatcttcaaacaaaagcccatgaaatt
gcaggtcagccatttaatcttgcatcgccaaaacagctacaagagttatttttcgagaag
ctcggttaccctattatcaagaaaaccccaaaaggtgccccttcaaccgctgaagaggtg
ttagtcgaattagcactagattacccactgccgaaaatcatcctggagcaccgcagtctt
gccaagctaaagagcacatatactgacaagctacctttaatggtcaatgccaagtcaggg
cgagtccataccagctaccaccaagcgaatgctgctacagggcgcttgtcttctagtgag
ccgaacctgcagaacatccctattagaaccgaagagggtcgccgcattcgccatgcgttt
atcgcccctgaaggcagaaaaatacttgcagccgattactcgcaaatcgaactaaggatc
atggcgcacctatcgcaagataaaggtctgctaaccgcgtttgctgaaggcaaagatatt
cataaagccacagcagcagaggtatttgatgtggatttcagtgaagtcactagcgatcaa
cgtcgccgtgcaaaagctgtcaactttggtctaatctatggcatgtcagcttttggttta
gccaagcagttagatatccctcgcgcggaagcacaacgttatatcgatacctactttaag
cgctacccaggtgtactcaactacatggaagagactcgggctattgccactgatctgggc
tatgtatcgacactatttggacgccggctgtatttacctgcaattaaagatcgcaacgca
atgcgcaggcaagctgccgaacgcgcagcaatcaacgcacctatgcaaggcactgctgcc
gatataatcaaaaaagcgatgattaatgtcgctaaatggattgagaccgaaacaaacggt
gaaatcaccatgatcatgcaggtacacgatgaattggtgtttgaggttgatgctgataaa
gctgacagtttgcaagttaagatttgtgagttaatggccgcggctgcaacacttgatgtc
gaactgcttgctgaagctggtattggtgacaattgggagcaggcgcactaa
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