Sutterella wadsworthensis: I6J16_00695
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Entry
I6J16_00695 CDS
T07195
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sws
Sutterella wadsworthensis
Pathway
sws03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sws00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J16_00695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sws03019
]
I6J16_00695
03016 Transfer RNA biogenesis [BR:
sws03016
]
I6J16_00695
Enzymes [BR:
sws01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I6J16_00695
Messenger RNA biogenesis [BR:
sws03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6J16_00695
Transfer RNA biogenesis [BR:
sws03016
]
Prokaryotic type
tRNA degradation factors
I6J16_00695
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
RNase_II_C_S1
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
QQS89987
LinkDB
All DBs
Position
124271..126631
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AA seq
786 aa
AA seq
DB search
MSKKKSKQLPITEVQLTPEQIAQAKEILAGLQKDIQYAAAKKNLVRMMPCAKSVANALVM
KLSEEGFEGGEEHWFRHPDAPTATGVVQGARRPSDMKVTPQSVDGAEFSLTASAQVVPGD
VVELRQTISGWRPAGLVSRPQRRWVCRCVTDAAAKEIEWLLFKPISAFAPIELQVNVQEV
PPEVDLERDAVELEISADAPFFAKRREDSYWGSDEEWQIFPAHFVRKVGVMNDPLGEMAI
ASAQFGVPIDFSPDTLDEAEKLPEKVDRRSLLHRVDLTDLAFVTIDGEDARDFDDAVYCE
ETPEGWRLLVAIADVSHYVRPGTSLDRDAQKRATSVYFPSSVVPMLPEKLSNGLCSLNPG
VDRLTLVCDALVNRKGETTAYQFYPAVIHSHGRLTYTAVWSALQGEAWGLNTVGPRLGEL
KRLYALYGVLRAARSERHALDFETEESAADFAADGEIIGFHVRDHNDAHRIIEECMLVAN
VCAAQFAIAKKQTTLFRVHGEPEQTKLNDLKSILAGFGISFKLKGSENLAPVLAKLIEDT
KDKPYLQTAILRTMQRACYQPENIGHFGLQYPAYAHFTSPIRRYPDLLLHRTIKGILSKR
SYTPAVEFDDAELMTGYHARKLGSNPEAKPSGAAKPLSRQEAKKAVWTRLGIICSAAERR
ADDASREVMKFLKCQYLLSADQKSFQATVTGMCPAGIFVTLSDMPIEGFVHISQLGWGYF
VYDPAKQTMTSHEEMTEIRLGDQLTVRLEDVDLKERRINFTLLSNQSRRHPAKGGGRRRF
DDDFWY
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaaaaagagcaaacagctgccgatcacggaagttcagcttacccctgagcag
attgcccaagccaaggaaatccttgctgggcttcaaaaggatattcaatacgctgcggcc
aaaaagaacctcgttcgcatgatgccctgcgccaaatccgtggcgaacgcattggtcatg
aagctcagtgaagagggatttgaaggcggcgaagaacattggtttcgtcatcccgatgct
cccacagcgaccggcgtcgtacagggcgctcggcgtccgagcgacatgaaggtgacgccg
cagagcgtcgatggggcagagttcagtctgacggcatcggcacaggtcgtgcctggcgac
gtggtagagctgcgtcagacgatcagcggctggcggcctgcgggactggtttcgcgtccg
cagcgtcgatgggtctgccgttgtgtgactgacgctgccgccaaagaaatcgagtggctg
ctctttaaacccatttctgcttttgcgccgattgaactgcaggtcaacgttcaagaggtg
ccgcctgaggtagatctcgaacgtgacgccgttgaactggaaatcagcgccgatgcgcct
ttttttgccaaacgccgcgaagattcatattggggttcggacgaagagtggcagattttc
ccggcacattttgttcgcaaagtaggcgtgatgaatgatccgttgggtgaaatggcgatt
gcctccgctcaattcggcgttcccattgatttttcacccgatacgctcgatgaggcggaa
aaactgcccgagaaggtggatcgcagaagtcttttgcaccgagtggacctcacggatctc
gctttcgtgaccatcgacggtgaagatgcgcgcgacttcgatgatgctgtctactgcgag
gagactccggaaggctggcggctcttggtggccattgctgacgtcagtcactacgttcgt
ccgggcacatcgctcgaccgcgatgcacaaaagcgagccacatcggtctatttcccgtct
tcggttgtgccgatgctccccgaaaagctctccaacgggctttgttcgctcaaccccggc
gttgatcggctgacgctggtttgcgatgccttggtcaaccgcaaaggggagacgacggct
tatcagttttatccggcggtcattcattcgcacggtcgcctgacctataccgctgtatgg
tcggcgctgcagggagaagcttggggactgaacacggtggggccgcgtttaggtgaactt
aagcgtctttatgcgctttacggcgtactccgagcggcgcgctctgagcgtcatgcactt
gatttcgaaacagaggaaagcgcagcggattttgcggcggacggcgagatcatcgggttc
cacgtgcgtgaccacaatgatgcccatcgaatcattgaggaatgtatgttggtggccaat
gtctgcgccgcgcagtttgcgattgccaagaagcagacaacgctctttcgcgttcatggt
gaacccgagcagacaaagctcaacgacttaaagagcattctggcggggtttggcatttcc
ttcaaactgaaggggtcggagaatctcgcccctgtattggcaaagctcattgaagatacg
aaagataaaccctatctgcagacggccattttgcgcacgatgcagcgcgcgtgttatcag
ccggaaaatatcgggcattttggtcttcagtatccggcctatgcgcacttcacgtcgccg
atccggcgttaccccgatttgcttttgcaccgcacaatcaaggggattctctctaagcgc
tcctatacgccggccgttgaatttgacgatgcggagctgatgacggggtatcacgcccgc
aagctcggttccaatccggaggcaaaaccttcaggggcggcaaaacccttaagccgtcag
gaggcaaaaaaggccgtttggacgcgcttaggcatcatctgctcggccgcggagcgtcgt
gctgacgatgcgtcgcgcgaggtgatgaagttcctgaaatgtcagtatctgctgtcagcg
gatcagaaatccttccaggcaaccgttaccggtatgtgcccggcaggaatttttgtgacg
ctcagcgacatgccgattgaaggatttgtgcatatctcacagcttggctggggttatttt
gtctacgatcccgccaaacaaacgatgacgtcgcatgaagagatgacggaaattcgtctt
ggggatcagctgacggtacggcttgaagatgtggatctgaaggagcggcggataaacttt
acgctcttgagcaatcagagccgccgtcatcctgccaagggcggcggacgccggcgcttt
gatgatgatttctggtactaa
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