Sutterella wadsworthensis: I6J16_07920
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Entry
I6J16_07920 CDS
T07195
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sws
Sutterella wadsworthensis
Pathway
sws03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sws00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6J16_07920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sws03019
]
I6J16_07920
Enzymes [BR:
sws01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6J16_07920
Messenger RNA biogenesis [BR:
sws03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6J16_07920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQS89080
LinkDB
All DBs
Position
complement(2049690..2051123)
Genome browser
AA seq
477 aa
AA seq
DB search
MSSFDQFGLDPRILSAIERMGYTQPTPIQEKAIPVVLMGGDVMGAAQTGTGKTAGYGLPL
IARILPKANTSMSPARHPVRALILAPTRELADQVSDNLVKYCADTPLRAGVVYGGVDIRP
QADMLRRGVEILTATPGRLLDHVQQRSVNLSQVEIVVLDEADRMLDMGFLPDISRILQLL
PQHRQSLLFSATFSPEIKKLAKSFLKDNPTVIEVARENSTAETVTQELFAVNDREKTDVL
IDMLKTRGPEGTPLTQVLVFVNAKITCRRLARTLERVGINADAIHGDKTQEERQVALEGF
KNGAIHVLVATDVAARGLDIKELPFVINYDVPYSAEDYVHRIGRTGRAGAKGVATMLATP
EDKRLVEAIEALTKQTFKPISISPMPRTRRGSGAPYRRDDRSSYAERVDTPEDERLARER
ARAYMPPAQRHRDPIFDMPYLENPRATSSAQKADAPVFLERQEKRRPVAALLGGRGR
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctttcgatcagttcggtctcgatccccgcattctttctgccattgagcgtatg
ggctacacccagccaacgccgattcaggaaaaagctattcctgtggtgctcatgggaggc
gatgtgatgggcgcggcacagaccgggacagggaagacagcaggctatggactgccgctc
attgcgcgcattctgcccaaggcgaatacttcgatgtcgccggctcgccatccggttcgg
gcactcattctggctcccacgcgcgaacttgcggatcaggtttccgacaatctcgttaaa
tactgtgccgatacgccgttgcgcgccggcgtggtttatgggggcgtcgatattcggccg
caggccgatatgctccggcgcggcgtggagatcctcacggcaacgccgggtcggctgctc
gaccatgtgcagcagcgctcggtcaatttgtctcaggtcgaaattgtggtgcttgacgaa
gctgaccgcatgcttgacatggggttcctgcccgatatttcccgcattctgcagcttttg
ccccagcatcgacagagtcttctcttttctgcgactttttcgcctgagattaaaaagctc
gccaagagcttcctcaaggacaacccgacagtaatcgaagttgcccgcgaaaattccact
gctgagacggtgacgcaggagctttttgccgtcaatgaccgcgaaaagacagatgtgctc
atcgatatgcttaagacgcgcggtccggaagggacgccgctcacgcaggtgctcgttttc
gtcaatgccaagattacctgtcgtcgtcttgcacgcacgcttgagcgcgtcggcatcaat
gctgacgccattcacggtgacaaaacgcaggaagaacgtcaggtggcgctcgagggcttc
aagaacggtgcaatccatgtgctcgtcgcaaccgatgttgccgcccgaggtcttgacatt
aaggagcttcctttcgttatcaattacgacgttccttacagcgcagaagattacgttcac
cgcatcggccgcactggccgtgccggcgcaaaaggtgtggcaacaatgcttgctacgcct
gaagacaaacgtctcgttgaagcgattgaggctttgacaaaacagacctttaagccgatt
tcgatttcgccgatgccgcgtacgcgccgaggctcaggtgcaccctatcgccgtgacgac
cgctcgtcctatgctgaacgtgtcgatacgcctgaggatgaacgtcttgcgcgtgaacgc
gctcgtgcgtacatgccgcctgcgcagcgtcatcgtgaccccattttcgatatgccgtat
ctggaaaatccgcgggcgacctcgtcggcgcagaaggccgatgcgccggtctttcttgag
cggcaagaaaagcgtcgtccggttgcggcgctgctgggcggccgcggtcgttaa
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