Sutterella wadsworthensis: I6J16_07935
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Entry
I6J16_07935 CDS
T07195
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sws
Sutterella wadsworthensis
Pathway
sws02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sws00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I6J16_07935 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sws03021
]
I6J16_07935 (rpoD)
Transcription machinery [BR:
sws03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I6J16_07935 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
AMP-binding_C_2
FXR_C1
Motif
Other DBs
NCBI-ProteinID:
QQS91007
LinkDB
All DBs
Position
complement(2054627..2057383)
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AA seq
918 aa
AA seq
DB search
MAVAKKAKKDGVEVKIETSNDAQKDKKHSKRKTKTATLETSGLTLSIESVEPEKTSKKAV
KAKKVKGEKTPKTAELQAVPEESPAAAAEPVKPTRLRKSAKKVVAKADADDLNTPEYPAG
DEKAKPVRKTRAAKKTEPSEETLPAAEASAAAEGKKAVRARKVKTVKAKAPAEELSAEQA
EAAPVKTPKSKAAKPKAAKSTAKSKGRKKSAKPVDADSEDFDFDDDGGEDIAGVIDDEDA
DYEDIPELDEVEDIEAVEDVGDETDEDGAADAEAAPSEAEPEAAPKKTRRSKKSRAARDK
ALMEAMKHGYGAAEESTEDRRSKLIKLISLGKERGYVTYSEINDNIPNTLLDEDAIETIV
NILGNLNIAVHEVAPDEEQLLIQGGAEGVSDEDAEAEAEAALSTVESEFGRTTDPVRIYM
REMGSVELLSRQDEIEISKRIEDGLKHMVLAIARCPVTVHEILESAERIRSGETPIDEVV
DGIVTPDDQKNVVGAVEDETDMGASAMTVGQLEDLKEKSLAVFDRVEAHFRSLVETFDGK
GPHAPELEGLKDQIQRELMEIRFTAKTADRLCESLRRTIGIVRGSERTVYDEYVRHLHLP
REWFLANFISNATRIGWVDEVAAAYPDKAQVILHMRATVEEEQRRLAQLERESHMTVAEL
LDTYKQMATGESKARNAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINRMNRITRQELQETGVEP
DSRRLAELMEMPEDKILKIMKIAKEPISMETPIGDDDDSHLGDFLEDTQTVAPAEAVQNA
SLSDTVKQVLDSLSPREAKVLRMRFGIEMQSDHTLEEVGKQFDVTRERIRQIETKALRKL
RHPSRADKLKSFLDETDN
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggctaagaaagcgaagaaagacggcgtggaagtcaaaatagaaacttccaat
gatgcgcagaaagataagaagcactcgaagcgcaaaacaaagacagcgaccctcgagact
tccggtcttacgctttctatcgaatccgtagaacctgaaaaaacgtccaagaaggccgta
aaggcaaagaaagtcaaaggcgaaaaaacgcctaaaaccgctgaacttcaggctgtgcct
gaagagagtcctgcagctgcggccgaacccgtcaagccgactcgtctgcgcaaatcagcc
aagaaggtcgttgccaaggcggatgcggatgatttgaatacgccggaatacccagctggc
gatgagaaggccaagcctgtccggaagactcgcgcggcgaaaaaaacggagccttcggaa
gagaccctgcctgcggcggaagcgtctgcagctgctgaggggaaaaaagcggtcagagca
cgcaaggtcaaaacggtgaaagccaaagctccggccgaagaactttcagcagagcaggct
gaggcggcgccagtcaagacgcccaaatcgaaagcggccaaacctaaggcggccaagagc
accgcgaagagcaaaggacgcaaaaaatcagcaaagcctgtcgacgctgacagcgaagac
ttcgattttgatgacgacggcggagaagacatcgctggcgtcattgatgatgaggatgcc
gactatgaagacatccccgaactcgatgaggtcgaagacatcgaggcggttgaagatgtc
ggggatgagactgacgaagacggcgctgcggatgcagaggctgcgccttctgaggctgag
cccgaagcggcgccaaaaaagacgcgccgctccaagaagtcgcgcgctgcgcgtgacaag
gcgctcatggaagctatgaagcatggctacggggcggctgaagagtctacggaagaccgc
cgctccaaactcatcaagctgatcagcttgggcaaggagcgcggctacgtcacctacagc
gaaatcaatgacaacatccccaacacgctgcttgacgaagatgccatcgagacgattgtc
aacattcttggcaatctcaacatcgcggtgcacgaagtggctcccgatgaggagcagctg
ctcattcagggcggtgctgagggggttagtgatgaagacgccgaagcggaagccgaggct
gccctttcgacggtagaaagtgaattcggccgtacgaccgatcccgtgcgtatttacatg
cgtgagatgggatccgtagagcttctttcgcgtcaggatgaaattgagatcagcaaacgc
atcgaagacggcctcaagcacatggttctcgccattgctcggtgcccagtaacggtgcac
gaaatccttgaaagtgctgaacgcatccggtccggtgaaacgcccattgatgaggtggtt
gacggcatcgtcacgcccgatgatcagaaaaacgtcgttggcgccgtggaggatgagaca
gacatgggcgcttccgctatgacggtggggcagctcgaagatttaaaggaaaagagcctt
gcggtgtttgaccgcgtggaagctcatttccgttcgctcgttgaaacctttgacggcaag
gggccgcatgcgcctgaactggaggggctcaaggatcagattcagcgcgaactcatggag
attcgctttactgccaaaacggccgatcggctctgtgagtcgcttcgccgcacgataggc
attgtccgcggcagcgaacgtacggtttatgacgaatacgtccgacacctccatctgccc
cgcgaatggttcctcgccaacttcatttccaatgccacccgcatcggctgggtcgatgag
gtggcggcagcctatcccgacaaggcgcaggtcattcttcatatgcgggcgacggttgaa
gaagagcagcgccgtttggcacagctcgaacgcgaatcccatatgacggtagcggagctg
ctcgacacctataagcagatggccacgggcgagtccaaagcgcgcaatgccaagcgcgag
atgacagaagccaatctgcgtctggtgatctccattgctaagaagtacaccaaccgcggg
ctgcagttcctggatttgattcaggaaggaaatgtgggcctcatgaaagcggttgacaag
ttcgaatatcgccgcggctataagttttccacttatgccacgtggtggattcgtcaggcg
atcacgcgaagcattgccgaccaggcccgcacgattcgtattccggtgcatatgatcgaa
acgatcaaccgcatgaaccgcattacgcgtcaggagcttcaggaaaccggtgtggaacct
gacagccggcggcttgctgaattgatggagatgcccgaagacaagatcctcaaaatcatg
aagattgccaaagagccgatatcgatggaaacgccgatcggcgacgatgacgattctcat
ttgggcgattttctggaggatactcagacggtggcgccggccgaggcggtgcagaatgct
tcgttgtcggacacggtcaagcaagtgctcgacagtctttctcctcgtgaagcgaaggtg
ctgcgcatgcgctttggcattgaaatgcagtccgatcatacgctcgaagaggtgggcaag
cagtttgacgttacgcgagaacgtattcgtcagattgaaacaaaggcactgcgcaagctt
cgccatccttcacgtgccgacaaactgaagagtttccttgacgaaacagacaattga
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