Sutterella wadsworthensis: I6J16_10075
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Entry
I6J16_10075 CDS
T07195
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sws
Sutterella wadsworthensis
Pathway
sws03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sws00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6J16_10075 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sws03021
]
I6J16_10075 (rpoC)
03400 DNA repair and recombination proteins [BR:
sws03400
]
I6J16_10075 (rpoC)
Enzymes [BR:
sws01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6J16_10075 (rpoC)
Transcription machinery [BR:
sws03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6J16_10075 (rpoC)
DNA repair and recombination proteins [BR:
sws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6J16_10075 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
HTH_13
Motif
Other DBs
NCBI-ProteinID:
QQS89459
LinkDB
All DBs
Position
complement(2518036..2522421)
Genome browser
AA seq
1461 aa
AA seq
DB search
MNSALNDILNQVNKDEHFDAIRIGLASPEKIHSWSYGEVKKPETINYRTQKPERDGLFCA
KIFGPVKDYECLCGKYKRLKNRGVICEKCGVEVTLAKVRRERMGHIDLASPVAHIWFLKS
LPSRMGMVLDIPLRDIERVLYFEAYIVVDPGLTPLSRGQLLTDEEFIQKTAEFGDDFKAM
MGAEAIGELLRTIDIDAEVLRLRDELSTTNSEAKIKKYAKRLKVLEAFQRSGIKPEWMIM
TVLPVLPPDLRPLVALDGGRFATSDLNDLYRRVINRNNRLKRLLEIKAPDIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGP
ELRLHQCGVPKLMALELFKPFIFNKLVQRQLAPTPKAAKKMVENQEPVVWDILEEVIFEH
PVMLNRAPTLHRLGIQAFEPKLIGGKAMQLHPLVCAAFNADFDGDQMAIHVPLSLEAQLE
ARGLMMSSNNVLFPANGDPSIVPSQDMVLGLYYATREKINGRGEGMFFADIPEVQRAWDS
GVVELQTRCTVRIKEYSLNRETGEKTPKIVRYETTVGRALLSEILPEGMSFKELNITLKK
KEIAKLINRCFRLCGLRATVIFADKLKDNGYRLSTRAGISICVGDMKVPVQKEQLVRAAE
QEVKEIEAQYTSGLVTQGERYNKVVDIWGRTSDQVGKVMMQELSTEPTIDRHGKKVSQES
FNSVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTTRGVEMRALVEGGEVIQALRDR
VLGRVTAVDVINPDTHEVVIAAGTLLDERLCDKLDEVGIDMVKVRTPLTCDTRYGLCAKC
YGRDLGRGTLVNAGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSIEAKSAGTV
GFNEAMRFVKSSKGELVVISRSGEIIVMDHGRERERHKVPYGASLLIQDGQTIKAGQQLA
TWDPMTRPIITEYAGRVKFENVIENVTVMNQVDEVTGLSSLVVIDPKKATKSGKSSSAGI
LRPLVHLIDENGDEVKIPGTDHAVTIQLPVGAFVVVRDGQDIGMGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGMLAEVTGTVTFGKETKGKQRLIITDQEGNSHETLISKDK
TVLVHDGQVVQKGEEVVDGPVDPHDILRLLGIEELARYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDPGDTHFIQGEQVERSEMLDENDRVTALGKRPATYENVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHQAHKAMEL
AERLERATQAFEEPPVTEQMTTASAAEPAEDADSEEEVRPMVDPFAFIDHKAPVEADPKL
SVKPADAAASSEPDADSKGAE
NT seq
4386 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgcgcttaatgacattttgaatcaggtcaataaggacgagcattttgatgcc
atccgcatcggccttgccagtcccgagaagattcactcctggtcctacggcgaagtcaag
aagccggagacgatcaactaccgtactcagaaacctgagcgcgatggcttgttttgcgcc
aagatttttggcccggtgaaagactatgagtgcttgtgcggaaagtacaagcgtctgaag
aaccgcggagtaatctgtgaaaaatgcggcgttgaagtgacgctggccaaagtgcgccgc
gaaagaatgggtcacattgacctcgctagcccggtggcgcacatttggttcttgaagagc
ctgccgagccggatgggtatggtgctcgatatcccgctgcgtgatatcgaacgcgtactt
tatttcgaggcttacatcgttgtagatccgggattgacgccgctttctcgcggtcagctc
ctcacggatgaagagttcatccagaagactgctgaatttggcgacgatttcaaggccatg
atgggtgccgaggccattggcgaactcttacgcacgattgatatcgatgctgaagttttg
cgcctgcgcgatgaactctcgacgaccaattccgaagctaagatcaaaaagtacgccaag
cgtctgaaagtgcttgaggctttccagcgatctggcatcaagcctgaatggatgatcatg
acggtccttccggtgttgccgccggatctccgaccgctggttgctcttgacggcggccgc
tttgcaacgtcagatttgaatgatctttatcgtcgagtcatcaatcgcaacaaccgtttg
aagcgtctccttgagatcaaggctcccgatatcatcgtccgcaatgaaaagcgtatgctg
caggaagctgtggattcgcttctcgacaacggccgtcgcggcaaggcgatgactggcgcc
aacaagcgtccgctcaagtctctcgctgacatgatcaagggtaagagcggccgtttccgt
cagaatctgctcggtaagcgtgtcgactactccggtcgttctgtgattacagttggtcct
gaactgcgcctgcatcagtgtggtgtgccgaagttgatggcgcttgaactcttcaagccg
ttcatcttcaataagctcgttcagcgtcagcttgcgccgacaccgaaggctgccaagaag
atggtggaaaaccaggaaccggtagtgtgggatattctcgaagaggtgattttcgagcat
cccgtaatgctcaaccgtgctccgacgcttcaccgtctcggtattcaggcatttgaaccg
aagctaattggcggcaaggccatgcagctgcatccgctcgtctgcgcggcatttaatgcc
gacttcgacggtgaccagatggctattcacgtcccgctttcgctggaggcgcagctcgaa
gcccgcggactgatgatgtcctcgaacaacgtgctcttcccggctaacggcgatccgtcg
attgtgccgtcacaggacatggtgctgggtctttattacgctacgcgtgagaagatcaat
ggccgtggcgaaggcatgttttttgcagacattcctgaggttcagcgtgcttgggacagt
ggcgttgtcgaactgcagacgcgttgcacggttcgtatcaaagagtattcgctcaaccgt
gaaaccggtgagaagacgccgaagatcgttcgttacgaaacgactgtcggtcgtgcgctc
ctttccgaaattcttccggaaggcatgagcttcaaggagctcaacattaccttgaagaag
aaggaaattgccaagctgatcaaccgctgcttccgtctttgcggtctgcgcgcaacggtg
attttcgccgacaaactcaaggacaacggctaccgtctgtcgacacgtgcaggcatctct
atctgtgtgggcgacatgaaggttcctgtgcagaaggagcagctcgtccgcgccgccgaa
caggaagttaaggaaatcgaagcgcagtacacgtcaggtcttgtgacgcaaggtgaacgc
tacaacaaggtggtggacatttggggtcgtacatcggaccaggtcggcaaggtgatgatg
caagagctctccacggagcccactatcgaccgtcacggcaagaaggtttctcaggagtcc
tttaacagcgtttacatgatggctgactctggtgctcgtggttccgcagctcagattcga
cagctcgccggtatgcgcggtttgatggctaagccagacggctccattattgaaacgccg
attacagcgaacttccgtgaaggcctcaacgttctgcagtacttcatttcaacccacggt
gctcgtaagggtttggctgatacggcgttgaagacggcaaactctggctacctcacccgt
cgtctcgttgacgtgacgcaggatcttgtggtggtcgaggacgactgcggtacgactcgc
ggcgttgagatgcgtgcgcttgtggaaggcggtgaagtcattcaggcgctgcgtgatcgt
gttctcggtcgtgtcactgctgttgacgtcatcaatcctgatacgcatgaagttgtgatc
gctgccggcaccctgctggatgagcggctttgcgacaaacttgacgaagttggtattgac
atggtcaaggttcgtacgccgctgacctgtgatacccgctacggtttgtgcgccaagtgc
tatggtcgtgatctcggccgcggcacgttggttaacgcaggcgagtctgtcggcgttatc
gcagctcagtcgattggtgagccgggtacgcagctgacgatgcgtacgttccacattggt
ggtgcggcgtcccgtgctgcagttgcatcgagtatcgaggccaagtctgccggcacggtg
ggcttcaatgaagcaatgcgcttcgtgaagtcttccaagggtgaactcgtggtgatttct
cgttccggtgaaatcattgtgatggatcacggtcgtgaacgtgaacgccacaaggtaccg
tacggcgcctcgctcttgattcaagatgggcagacgattaaggccggacagcagcttgct
acctgggatccgatgacccgtccgattattacggagtacgccggccgcgttaagtttgag
aacgttattgaaaacgttaccgtgatgaatcaggtcgatgaagtgacggggctttcgagc
cttgttgtgatcgatccgaagaaggctacgaagagcggaaagagctcttctgctggcatc
ctgcgcccgttggttcacttgatcgatgaaaacggcgatgaagtgaagatcccgggtacg
gatcacgcagtgacgattcagctgccggtgggcgctttcgtggttgttcgcgacggccag
gacatcggtatgggtgaggtgcttgctcgcattccgacggaatcgcaaaagacccgtgat
attacgggtggtttgccgcgtgtggctgaactctttgaagctcgcagccccaaggatgct
ggcatgctcgccgaggtgactggtactgtgaccttcggtaaggaaacaaagggcaagcag
cgcttgatcattactgatcaggaaggcaattcacacgaaacactcatcagcaaagacaag
acggtcctcgttcatgacggtcaggtcgtgcagaagggtgaagaagtggtggatggtccc
gttgatccgcacgacattttgcgactgctcggtattgaagagctcgcgcgttacattgtc
gacgaagtccaggacgtttaccgcctgcagggtgtgaagatcaacgacaagcacattgaa
gtgattgttcgtcagatgttgcgccgtgtccagatcaccgatccgggcgatacgcacttc
atccaaggtgaacaggtcgaacgttccgaaatgctcgatgagaacgatcgagttactgcg
ctgggcaaacgtccggcaacgtacgaaaacgttctgctcggcattacgaaggcatcgctt
tcgacggacagcttcatttcggcagcgtctttccaagaaacaacgcgagtactgacggaa
gccgccatcatgggcaagcgagacgacctgcgtggtttgaaggaaaacgtgatcgttggc
cgtctgattccggcaggtacgggtcttgcctaccatcaggctcataaggcgatggagctg
gcagaacgtcttgaacgtgctactcaggcctttgaagaaccgccggtaacggaacagatg
acgacagcatcagcggctgagccagctgaagatgcggacagtgaggaggaggttcgtccg
atggtcgatccgttcgccttcattgaccacaaagctccggttgaagctgatccgaagctg
tcagttaaacccgccgacgcagcagcgtcttccgagcctgatgcggatagcaaaggtgct
gaataa
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integrated database retrieval system
