Sphingomonas xanthus: FMM02_02890
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Entry
FMM02_02890 CDS
T07168
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sxa
Sphingomonas xanthus
Pathway
sxa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sxa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FMM02_02890 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sxa03021
]
FMM02_02890 (rpoB)
03400 DNA repair and recombination proteins [BR:
sxa03400
]
FMM02_02890 (rpoB)
Enzymes [BR:
sxa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FMM02_02890 (rpoB)
Transcription machinery [BR:
sxa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FMM02_02890 (rpoB)
DNA repair and recombination proteins [BR:
sxa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FMM02_02890 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
UPF0653
RelB
Motif
Other DBs
NCBI-ProteinID:
QDP18997
UniProt:
A0A516IQ31
LinkDB
All DBs
Position
570311..574474
Genome browser
AA seq
1387 aa
AA seq
DB search
MATKQKDVPTMARNTNSRRIRKIFGNIHEISDMPNLIEVQRESYEQFLRSDPATGYVSGL
EKTLRSVFPIQDFAGTAHLDFDRYELEAPKYDTDECRQRGLTYAAPMRVTLRLTSFEIDP
DTEAKSVIDIKEQDVYMGDMPLMTQNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHAS
GKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLTSEEILNTFYNR
LSYVRGKNGWQVPYASESWRGQKPTHDVVDADSGEVIFKAHEKITPRKANAAGKDGVKNV
IIPTEEIYGRFSAYDLINEKTGEIYIEAGDEVSEENLDKLDKAGVDRLELLDIDYVNTGP
WIRNTLKADKSEDGDSALADIYRVMRPGEPPTRETADALFYGLFFDSERYDLSAVGRVKL
NMRLGLDAEDTVTTLRREDIIAVVQELVNLKDGKGEIDDIDNLANRRVRSVGELLENQYR
VGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVT
HKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYG
FIETPYRKVIDGKVSNEVIYLSAMEEAKHTIAQANAELEDSGGFAEEIVSSRRNGDFLMA
PRDTITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQADAPLVGTGME
ETVARDSGAAIAARRPGVVDQVDATRIVVRVSGELRAGESGVDIYTLMKFQRSNQNTCIN
QRPLVKVGDMVEAGEIIADGPSTQFGELALGRNVLVAFMPWNGYNYEDSILISERIVKDD
VFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILCGK
ITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDIDDRTR
AIQTEEKERLKKDADDEKAILNRATFARLSEMLIGQVATAAPKSIKKGSTLDEAMLEGTD
KHDWWKIAVKDDARQADLEALKAQYDESTAVINRKFEDRVEKLERGDELPPGVLKMVKVF
VAVKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQIF
ETHLGWAARGLGQQIGQMLEDIHAKGSDIAGKDVKEIRAKLKDIYGDAYAKDIDDRSDEQ
VMDLAQNLVGGIPMGTPVFDGAREGDVSDMLAKAGIDTSGQSTLYDGRTGEPFDRKVTLG
IIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQ
EMLTVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELNSIESEDDE
PQAIAAE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaagcaaaaagacgtgccgaccatggcccgcaacaccaactcgcgccgcatc
cgcaagattttcggcaacatccacgaaatcagcgacatgccgaacctgatcgaggttcag
cgcgaaagctatgagcagttccttcgctccgatccggcgaccggctatgtctctggcctg
gaaaagacgctccggtcggtgttcccgatccaggatttcgccggcaccgcgcacctcgac
ttcgatcgctatgagcttgaagcgcccaaatatgacaccgacgagtgtcgccaacgcgga
ctgacctacgccgcgccgatgcgcgtgaccctgcgcctcacctccttcgaaatcgatccc
gacaccgaggccaagtcggtcatcgatatcaaggagcaggatgtctacatgggcgacatg
ccgctcatgacccagaacggcaccttcatcgtcaacggtaccgaacgcgtcatcgtgtcg
cagatgcaccggtcgccgggcgtgctgttcgaccatgaccgcggcaagacccacgcctcg
ggcaaatatctcttcgccgcgcgcgtgatcccctatcgcggctcgtggctcgacttcgaa
ttcgacgccaaggacatcgtcaacgtccggatcgaccgcaagcgcaagctgccggtgacc
gcgctgctccatgcgctgggcctgaccagcgaggaaatcctcaacaccttctacaaccgc
ctgagctacgtccgcggcaagaacggctggcaggtgccctacgcctcggaaagctggcgc
gggcagaagccgacccacgatgtcgtcgacgcggacagcggcgaagtcattttcaaggcg
catgagaaaatcacgccgcgcaaggccaatgccgcgggcaaggacggcgtgaagaacgtc
atcatcccgaccgaggaaatctacggccgcttctcggcttacgacctgatcaacgaaaag
accggcgagatttacatcgaggccggcgatgaggtcagcgaggaaaatctcgacaagctc
gacaaggccggggtcgatcggctcgaactgctcgacatcgactatgtcaacacaggccct
tggatccgtaacacgctgaaggccgacaagtcggaagatggcgacagcgcgctggccgac
atctaccgcgttatgcgcccgggcgaaccgccgacgcgcgaaaccgccgatgcattgttc
tacggcctgtttttcgacagcgagcgctacgacctgtcggccgtcggccgcgttaagttg
aacatgcgccttggcctcgatgccgaggacaccgtgaccaccctgcgccgtgaagacatt
atcgcggtggtccaggaactggtgaacctcaaggacggcaagggcgagatcgacgacatc
gacaatctcgccaatcgccgcgtccgctcggtcggcgagctgctggaaaaccaatatcgg
gtcggcctgctccgcatggagcgcgccgtgaaggagcggatgagctcggtcgacgtgtcg
accgtcatgcccaacgacctgatcaacgccaagccggcggtcgccgcggttcgcgaattc
ttcggcagcagccagctgtcgcagttcatggaccagaccaacccgctcagcgaagtcacc
cacaagcgccgtgtgtcggcgcttgggccgggcggcctcacccgggagcgcgccggcttc
gaagtccgcgacgtccacccgacccactacggccggatctgcccgatcgagactccggaa
ggcccgaacatcggccttatcaacagccttgcctcgttcagccgggtcaacaagtacggc
ttcatcgaaactccctaccgcaaggtcatcgacggcaaggtttcgaacgaggtcatctac
ctgtcggcaatggaagaagcgaagcacaccatcgcccaggccaatgccgaactggaagac
tcgggcggctttgccgaagaaatcgtctccagccgccgcaacggcgacttcctgatggct
ccgcgcgacaccatcaccctgatggacgtttcgcccaagcagctcgtctcggtcgccgcg
tcgctgatcccgttcctggaaaacgatgacgccaaccgcgcgctaatgggttcgaacatg
cagcgccaggccgtgccgctgttgcaggccgacgcgccgctggtcggtaccggcatggaa
gaaacggttgcccgggactcgggcgccgcaatcgccgcccgccgtccaggcgttgtcgac
caggtcgacgcgacgcgtatcgtcgtccgcgtcagtggcgagctgcgggccggtgagtcg
ggcgtcgacatctacacgctgatgaagttccagcggtcgaaccagaacacctgcatcaac
cagcgtccgctggtgaaggtcggtgacatggtcgaggccggcgagatcatcgccgacggt
ccgtcgacccaattcggcgaactggcgcttggccgcaacgtgctcgtcgccttcatgccg
tggaacggctataattatgaggactcgatcctcatcagcgaacgtatcgtgaaggacgac
gtcttcacctcgatccacatcgaggaattcgaagtgatggcccgcgataccaagcttggg
ccggaagatatcacccgcgacattccgaacgtcggtgaggaggcgctgcgcaacctcgac
gaagccggcatcgtctacatcggcgccgaggtcgagccgggcgacatcctgtgcggcaag
atcacgccgaagggcgaaagcccgatgacgccggaagaaaagctgctgcgcgcaatcttc
ggcgaaaaggccagcgacgtgcgcgacacctcgcttcgcctgccgccgggcgttgccggg
acggtggtcgaggtgcgggtgttcaaccgccacggcatcgacatcgacgaccgtacccgt
gcgatccagaccgaggagaaggagcgtctgaagaaggacgccgatgacgaaaaggcgatc
ctcaaccgcgctaccttcgcccgcctttcggaaatgctgatcggccaggtcgcgaccgcc
gcgcccaagtcgatcaagaagggttcgacgctcgacgaagcgatgctggaaggcaccgac
aagcacgactggtggaagatcgccgtcaaggacgatgcccgccaggcggacctcgaggcg
ctcaaggcgcagtatgacgagagcactgcggtcatcaaccgcaagttcgaggaccgtgtc
gagaagctcgaacgaggcgatgagctgccgccgggcgtgctgaagatggtcaaggtgttc
gttgcggtgaagcgcaagctccagccgggcgacaagatggctggacgtcacggcaacaag
ggcgtcatcagccggatcctgccgatcgaggacatgccgttcctcgaagacgggacccat
gccgatatcgtcctcaacccgctgggcgtgccgagccgcatgaacgtcgggcagatcttc
gagacccatctcggctgggccgcgcgtggcctcggccagcagatcggccagatgctcgag
gacatccatgccaagggcagcgatatcgccggcaaggacgtcaaggagatccgggccaag
ctgaaggacatctacggcgatgcctatgccaaggacatcgacgaccggagcgacgagcag
gtcatggaccttgcccaaaacctggtcggcggaatcccgatgggcacgccggtgttcgac
ggcgctcgcgaaggagatgtgtcggacatgctggccaaggccgggatcgacacctcgggc
cagtcgacgctgtacgatggccgcacgggtgagcccttcgaccgcaaggtgacgcttggc
atcatctacatgctcaagctgcaccatttggtagacgacaagatccacgcccgctcgatc
ggcccgtacagcttggtcacccagcagccgttgggcggcaaggcgcagttcggcggccag
cgcttcggtgaaatggaggtctgggcgctccaggcctatggcgctgcctacacgctgcag
gaaatgctgaccgtcaagtcggacgacgtcatcggccgaaccaaggtctatgaagcgatc
gtgaagggcgacgacacgttcgaagccggtattcctgaaagcttcaacgtgctggtcaag
gaaatgcgctcgctgggcctcaacgtcgagttgaactcgatcgagagcgaagacgacgag
ccgcaagccatcgccgccgagtaa
DBGET
integrated database retrieval system
