Sphingomonas xanthus: FMM02_04525
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Entry
FMM02_04525 CDS
T07168
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
sxa
Sphingomonas xanthus
Pathway
sxa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sxa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FMM02_04525 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sxa03400
]
FMM02_04525 (uvrB)
DNA repair and recombination proteins [BR:
sxa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FMM02_04525 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FMM02_04525 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
Kinesin
AAA_16
DUF87
Microtub_bd
nSTAND_NTPase5
AAA
SWI2_SNF2
FATC
Motif
Other DBs
NCBI-ProteinID:
QDP19294
UniProt:
A0A516IR74
LinkDB
All DBs
Position
complement(898280..900478)
Genome browser
AA seq
732 aa
AA seq
DB search
MAIQIRTSLAEPETGDSFVPHRPARPDKAEGGRRFNLVSDYQPAGDQPTAIRELVEGIRD
NGEISQVLLGVTGSGKTFTMAQVIQETQRPALVLAPNKILAAQLYGEFKSFFPDNAVEYF
VSYYDYYQPEAYVPRTDTYIEKESSVNEAIDRMRHSATRSLLERDDVIIVASVSCLYGIG
SVETYSAMIFDLKKGQSVDQREVIRKLVALQYKRNDAAFARGNFRVRGDSLEIFPSHYED
SAWRVSFFGDEIEEITEFDPLTGKKTASLDYVKVYANSHYVTPGPTLKQAMQAIRHELEE
RLKELVAEGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYL
PDNALLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQS
VFVSATPGPWEMNETGGAFSEQVIRPTGLIDPPVEIKPVEDQVDDLVQEARKTAAQGYRT
LVTTLTKRMAEDLTEYLHEAGLKVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREG
LDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRVTGSMERALNETS
RRREKQEAYNAEHGITPATIKRNISDIIAHVSTRDGVVVDTGDEERPHLVGHNLRAYIGD
LEERMRKAAADLEFEEAARLRDEIRKLEEDELGIPDQDRAAPRAGNSTQGKPGTRRDRFG
KTRYKRSGFHRQ
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggccattcagattcgcaccagccttgccgagccggagaccggtgacagcttcgtccct
caccggcccgcgcgacccgacaaggcggaaggggggaggcgcttcaacctcgtcagcgat
taccagccggcgggcgaccagccgaccgcgatccgcgaactggtcgaagggattcgcgac
aatggcgaaatcagccaggtcctgctcggggtcacggggtcaggcaagaccttcaccatg
gcgcaggtcatccaggaaacgcagcgcccggcgctggtgcttgctcccaacaagattctt
gccgcccagctctatggcgagttcaaaagcttctttcccgacaatgcggtcgaatatttc
gtcagctactacgactattaccagcccgaggcctatgtcccgcgtaccgacacctacatc
gagaaggaaagttcggtgaacgaggcgatcgaccgaatgcgccactcggcgacgcggtcg
ctgcttgaacgcgacgacgtgatcatcgtcgcttcggtgtcctgtctctacggtatagga
tcggtcgaaacctactcggcgatgatcttcgatctgaagaagggccagtcggtcgaccag
cgcgaggtgatccgcaagctggtcgcgctgcaatataaacgtaacgatgccgcattcgcg
cgcggcaatttccgcgttcgcggagacagcctggagattttcccgtcgcactatgaggat
agcgcctggcgggtgagcttcttcggcgacgagatcgaggagattaccgagttcgatccg
ctgaccggcaagaaaaccgccagcctcgattatgtgaaggtttacgccaacagccactat
gtaacgcctggcccgacgcttaagcaggcgatgcaggcgatccggcatgaactggaggag
cggctgaaggagctggtcgccgaaggacggctactggaagcgcagcggctcgagcagcgg
accaatttcgatctcgagatgatcgccgcgacgggaagctgcgcgggaatcgagaattac
agccggttcctcaccggccgacttccaggcgagccgccgccgacgctctttgaatatctc
cccgacaatgcactattgttcgtcgacgaaagccaccagacggtgccgcagatcggggcg
atggcgcgcggcgaccatcggcgcaagatcacgctcgccgaatatggcttccgcctaccg
agctgcatcgacaaccggccgctgcggttcaacgaatgggacgcgatgcgtccgcagtcg
gtgttcgtctccgccacccccggaccatgggagatgaacgaaaccggcggcgcgttcagc
gagcaggtgatccgcccgaccgggctgatcgacccgccggtcgaaatcaagccggtcgag
gaccaggtcgacgatcttgtccaagaggccagaaagacggcggctcagggctatcgcacg
ctggtcaccaccttgaccaagcggatggccgaggacctgaccgaatatcttcacgaggcc
ggcctcaaggtccgctacatgcacagcgacgtcgagacgctggagcggattgagctgatc
cgcgacctcaggctgggcgtctacgacgtgctggtcgggatcaatttgctccgcgaaggg
ctcgatattcctgaatgcgggctggtggcgatcctcgatgccgacaaggaaggcttcctg
cgcagcgaaacctcgctgatccagaccatcggccgcgcggcgcgcaacgtcgacgggcgg
gttatcctttatgcggaccgcgtcacggggagcatggagcgcgcgctcaacgaaaccagt
cgccgtcgcgaaaagcaggaggcctataacgccgagcatggcatcacgccggcaaccatc
aagcgcaacatcagcgacatcatcgcccatgtgtcgactcgcgacggggtagtcgtcgac
accggcgacgaggaacggccgcatctcgtcggtcataatttgcgcgcgtatatcggcgat
cttgaggagcgaatgcgcaaggccgccgccgatctcgagtttgaggaggccgcccggctg
cgcgacgagatccgcaagctcgaagaagatgagctcggtatcccggaccaggaccgtgcg
gcgccgcgcgccggcaattcgacccaaggcaaacccggcactcgtcgcgatcggttcggc
aagacccgctacaaaagatccggcttccaccgtcaatga
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