Sphingomonas xanthus: FMM02_05160
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Entry
FMM02_05160 CDS
T07168
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sxa
Sphingomonas xanthus
Brite
KEGG Orthology (KO) [BR:
sxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
FMM02_05160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxa03019
]
FMM02_05160
03009 Ribosome biogenesis [BR:
sxa03009
]
FMM02_05160
04131 Membrane trafficking [BR:
sxa04131
]
FMM02_05160
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sxa04147
]
FMM02_05160
Messenger RNA biogenesis [BR:
sxa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
FMM02_05160
Ribosome biogenesis [BR:
sxa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
FMM02_05160
Membrane trafficking [BR:
sxa04131
]
SNARE
SNARE associated proteins
Others
FMM02_05160
Autophagy
Aggrephagy
Other aggrephagy associated proteins
FMM02_05160
Exosome [BR:
sxa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
FMM02_05160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_22
AAA_5
AAA_33
AAA_2
IstB_IS21
TIP49
AAA_14
AAA_28
Vps4_C
nSTAND3
NPHP3_N
AAA_18
RNA_helicase
AAA_24
AAA_11
AAA_7
Mg_chelatase
AAA_3
AAA_lid_PRS2_C
Zeta_toxin
AAA_30
DUF815
Sigma54_activat
AAA_17
ABC_tran
TsaE
Parvo_NS1
NB-ARC
ATPase
bpMoxR
MazE_antitoxin
CPT
Motif
Other DBs
NCBI-ProteinID:
QDP19405
UniProt:
A0A516IR86
LinkDB
All DBs
Position
1028461..1030770
Genome browser
AA seq
769 aa
AA seq
DB search
MATVDALSRKVQVANLPPADSGRGVARLPIKLMTELGLAEGDVIEIVGKRSTAARAIRPY
GDDQGLDIIRLDGLQRANAGVGSGEFVEIHKAVSKPATRVVFAPTQNNVRLQGSAQALQR
SFEGRPFCQGDTVATTGHQRVNADMPDHIRQLLNAPAFALQEVRLTVVSTAPKGIVHIDA
GTKVELLPEYTERDGERRADVTYDDLGGMRDTIDALREMVELPLRHPELFQRLGVDPPKG
VLLHGPPGTGKTRLARAVANESDAQFFHIAGPEIMGSAYGESEKRLRDIFEDAGKAAPSI
IFIDEIDSIAPKRGQVTGEAEKRLVAQLLTLMDGLEPRQNLVVIAATNRPEAIDEALRRP
GRFDREIIVGVPDQTGRREILGIHTRGMPLAEGVDLDELARRTYGFVGADLAALTREAAL
EAVRRIMPKIDLAEESIPTEVLDALSVDGNDFDNALKRVQPSAMREVMVQMPTLRWDDVG
GLDAARDKLREGIELPLKHPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAAARESEANFI
ATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGMGEPQVTERVV
NTILAEMDGLEELNNVVLIGATNRPNLIDPALLRPGRFDELIFVGTPDTAGRRRILAIHT
KDMPLAKDVDLESLARRTERFTGADLEDLVRRAGLTALRRGLDSAEVSMDDFEKALKETR
ASVTEQMIQDYEMIEKTLKADAVKPVGGIGFVLPGMLQPKSPTKGDPPA
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgtcgacgcgctttcgcgcaaggtccaggtagcgaacctgccccccgccgac
agcggtcgcggcgtcgcccgcctgccgatcaagctgatgactgagctcggcttggcggaa
ggcgatgtcatcgagatcgtcggcaagcgctccaccgccgctcgtgcaattcgcccttat
ggcgatgaccaggggctcgacatcatccgtctcgacggtctgcagcgggccaacgccggg
gtcggatcgggtgaattcgtcgagatccacaaggcggtgtccaaacccgcgacgcgcgtc
gttttcgcgccaactcagaataatgtccggctgcaaggttctgcccaagcgctccagcgc
agtttcgagggacgcccgttctgccagggcgataccgtcgccaccaccgggcatcagcgg
gtcaatgcggacatgcccgaccatatccggcaattgctcaatgcccccgcctttgccctg
caggaggtacgcctgaccgtggtttcgacggcgcccaagggcattgtccatatcgacgcc
ggcaccaaggtcgaactgctccccgaatataccgagcgcgatggcgagcggcgcgctgac
gtcacctacgacgatctcggcgggatgcgcgacacgatcgacgcgctgcgggagatggtc
gagttgccactgcgtcatcccgaactgttccagcggctcggcgtcgatccgcccaagggc
gtcttgctccacggcccgcccggtacgggcaagacccgcctggcccgcgccgtggccaat
gaaagcgatgcccaattctttcacatcgccggtcccgagatcatgggctccgcctatggc
gaaagcgagaaacggctgcgcgacatcttcgaggacgcgggcaaagccgcgccgtcgatc
atcttcatcgacgaaattgactccatcgctccgaagcgcggccaggttaccggcgaagcg
gagaagcggctggttgcccagctgctgacgctgatggatgggcttgagccccgccagaat
ctggtcgtcatcgccgcaaccaatcggcccgaagcgatcgacgaggcgctgcggcggccc
ggccgcttcgaccgcgaaatcatcgttggcgttcccgaccagaccgggcggcgggaaatc
ctcgggatccacactcggggaatgcccctggccgaaggcgtcgacctcgatgagctggcc
cgtcgcacctacggcttcgtcggggctgacctcgccgccctgacgcgcgaagcggcgctg
gaagcggtgcggcggataatgccgaagatcgacctggcggaggaatcgatcccaaccgaa
gtgctcgacgcgctgtcggtcgacggaaatgatttcgacaatgcgctgaagcgcgtccag
ccctccgcgatgcgcgaagtgatggtccagatgccaacgctgcgctgggacgatgtcggc
ggcttggacgccgcacgcgacaagttgcgcgaaggcatcgaactgccgctcaaacatccc
gatgcgttccgccggcttggcatccggccggccaagggcttccttctctacggcccgccc
ggtaccggcaagaccctgctggccaaggccgcggcgcgcgaaagcgaggccaatttcatc
gccacgaaatcaagcgatctgctgagcaaatggtatggtgaaagcgagcagcagatcgcc
cggctgttcgcccgcgcccgccaggtcgcgccgacggtgatcttcatcgacgaactcgac
agcctggtgcccgcgcgggggggcggcatgggcgagccacaagtgaccgagcgggtcgtc
aacaccattctggccgagatggacgggcttgaagaactcaacaacgtcgtattgatcggc
gccaccaaccgtccgaacctgatcgacccggcgttgcttcgcccgggccggtttgacgaa
ctgatcttcgtcggcactccggataccgccggccgccgccggatccttgcgatccatacg
aaagacatgccgctggccaaagacgtcgacctggagtcgctggcgcgccgcaccgagcgc
ttcaccggcgccgacctggaagaccttgttcgccgggccggactgaccgcgctgcgccgg
ggactggacagcgcggaagtgtcgatggacgactttgaaaaagcgctgaaggaaacccgc
gcgtcggtgaccgagcagatgatccaggactatgagatgatcgaaaagacgctcaaggcc
gacgccgtgaagccggtcggcggaatcggctttgtgctgcccggcatgctccagcccaaa
tcgccgacgaaaggcgaccccccggcctag
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