Sphingomonas xanthus: FMM02_05725
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Entry
FMM02_05725 CDS
T07168
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sxa
Sphingomonas xanthus
Pathway
sxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FMM02_05725 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxa03019
]
FMM02_05725 (recQ)
03400 DNA repair and recombination proteins [BR:
sxa03400
]
FMM02_05725 (recQ)
Enzymes [BR:
sxa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FMM02_05725 (recQ)
Messenger RNA biogenesis [BR:
sxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FMM02_05725 (recQ)
DNA repair and recombination proteins [BR:
sxa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FMM02_05725 (recQ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDP19504
UniProt:
A0A516IRQ6
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All DBs
Position
1141938..1143701
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AA seq
587 aa
AA seq
DB search
MTVTHQILHDRFGFSHFRGVQEQVVDRAISGGHTLAVMPTGAGKSLCYQLPALIRPGTGI
VISPLIALMQDQVRSADSLGIRAAALTSASDNPRAIRDALRDGALDLLYVAPERAATEGF
SRLLEEADIALFAIDEAHCVSEWGHDFRPDYRQLHSLLDQHREVPRLALTATADRRTRSD
ILVQLGIPEEGLVVAGFDRPNIRYHVRPRDGLPSQLKSLLRDQPGAGIVYAPSRDKTERI
AEQLRGPGRSALAYHAGLDHGVRQRNQGAFVASEDMVMAATIAFGMGIDKPDVRFVAHAA
IPKSIEAYYQETGRAGRDGDPAEAWLFWGAEDFARARRRIETEIEPDRRAGERERLNSLA
AFVEAATCRRAILLRHFGEDPPQACGNCDNCLDPPATIDVTTVAQKLLSAAFRTEMRFGV
AHLAAVLAGDDNEKVRQFGHDRLSVFGIMDKDELALVRPVARSLVARDALRTDDYGGLSF
GPGAKAILKGGETLVIAVPPSRPSRKRRGGDHPHDPLFEALRDWRRRRAAEQGVPPYVIF
HDSTLRAVATGKPSSLSALSQIEGIGDTKLERHGESLLAALVGAMEE
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgtcacgcatcaaatccttcacgaccgatttggcttttcccattttcgcggggtc
caggagcaagttgtcgaccgtgccatctccggaggccacacgctcgcggtgatgcccacc
ggcgcaggcaagtcgctctgctaccagcttccggccctgatccggcccggtaccgggatc
gtcatctccccgttgatcgcgctgatgcaggaccaggtgcgaagcgccgacagcctgggc
attcgcgccgccgcgctgaccagtgccagcgacaatccccgggcgatccgcgatgcgctg
cgcgacggggcgctcgacctgctctacgttgcgcctgaacgcgccgcgaccgagggattc
tcccgcttgctggaggaagcggacattgccctgttcgcaatagacgaggcgcattgcgtg
agcgaatggggccacgacttccgacccgactatcgccagctccattccctgctcgaccag
caccgcgaggtaccccggcttgcgctgaccgcgaccgccgaccgccgcacgcgctccgac
atcctcgtccagcttggaatccccgaggagggtctggtggttgccgggttcgaccggccc
aacatccgctaccatgtccgcccgcgcgacggcctcccgagccagctcaagagcctgttg
cgcgatcagccgggcgccgggattgtctatgcgccgagccgcgacaagacggaacggatt
gccgagcagctgcgcggacccggccgctcggcgctggcctatcatgctgggctcgaccat
ggcgttcgccagcgcaaccagggcgcttttgtcgccagcgaggacatggtgatggcggcg
acgatcgcgttcggcatgggcatcgacaaacccgacgtacgcttcgtggcccacgccgcc
atccccaagtcaatcgaggcctattaccaggagacaggccgtgccgggcgcgacggcgac
cccgccgaggcctggctgttctggggcgccgaggatttcgcccgcgcccgccgccgaata
gaaaccgagatcgagccagaccgccgcgccggggagcgcgaacgattgaactcgctcgcc
gccttcgtcgaggccgcgacctgccgccgcgcgatcctgctgcgccatttcggcgaggac
cctccgcaagcttgcggcaactgcgacaattgcctcgacccgccggcgacgatcgacgtg
actaccgtcgcgcaaaaactgctgagcgcggcgttcagaaccgagatgcgtttcggagtc
gcgcacctggccgcggtacttgccggcgacgacaacgaaaaggtgcgccagttcggccat
gaccgattgtcggtattcgggatcatggacaaggacgagctggccttggtcagaccggtc
gcaaggtcgctcgtggcccgcgatgctctgcgcaccgacgactatggcggattgagcttt
ggtcccggcgcgaaggcaatcctcaagggcggcgagacgctggtcatcgccgtcccgccg
agccggccaagccgcaagcggcgcggcggggaccatccgcacgatccattgttcgaggcg
ctgcgcgactggcgccgccggcgcgccgccgaacagggggtcccgccttatgtgattttc
cacgattccacgctgcgcgcggtggcgacggggaaaccttcgagcctttcggcgctttct
cagatcgaaggtatcggcgataccaagctggagcgccacggcgagtcgctactcgccgcg
ctggtgggcgcgatggaggaatga
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