Sphingomonas xanthus: FMM02_05970
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Entry
FMM02_05970 CDS
T07168
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sxa
Sphingomonas xanthus
Pathway
sxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FMM02_05970 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sxa03021
]
FMM02_05970 (rho)
03019 Messenger RNA biogenesis [BR:
sxa03019
]
FMM02_05970 (rho)
Transcription machinery [BR:
sxa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FMM02_05970 (rho)
Messenger RNA biogenesis [BR:
sxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FMM02_05970 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
S1CSD-TOTE-2
NACHT
ATPase_2
AAA_25
AAA_22
Fungal_virus_P2_C
OB_RNB
AAA
AAA_14
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
QDP19548
UniProt:
A0A516IRM8
LinkDB
All DBs
Position
complement(1191183..1192439)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKQKTPADLVAMAEEMGIEGASTMRKQDLMFSILKVRAETGAEINGMGTIEVLND
GFGFLRSPEANYLAGPDDIYVAPNVVRKFGLRTGDTVEGEIRAPKDGERYFALTKVTQIN
FDDPDAVRHRVNFDNLTPLYPDEKLKLDTLDPTIKDKSARVIDIVSPLGKGQRALIVAPP
RTGKTVLLQNIARAITDNNPEVFLIVLLIDERPEEVTDMQRSVNGEVISSTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSKMDEVIFEEFKGTGNSEIVLDRKVSDKRIFPSLDV
GKSGTRKEELLVDQATLSKMWVLRRILMQMGTIDAMQFLLDKMKDAKSNEDFFASMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcaaggacctgaagcagaaaacccccgctgacctcgtcgccatggccgaggaa
atggggatcgaaggcgcatcgacgatgcgcaagcaggacttgatgttctcgatcctcaag
gttcgcgcggaaacgggcgccgagatcaacgggatggggacgatcgaggtgctgaacgac
ggtttcggctttctccgcagcccggaggccaattacttggccggtcccgacgatatctat
gttgcgcctaacgtcgttcggaagttcggcctgcgcaccggggataccgtcgaaggcgag
attcgcgcgcccaaggatggggagcgttacttcgcgctgactaaagtcactcagatcaat
tttgacgatcccgacgcggtccggcatcgggtcaacttcgacaacctcactccgctttat
cccgacgaaaagctgaagctcgacacgctcgacccgacgatcaaggacaagtcggcgcgg
gtcatcgacatcgtttcgccgctgggcaagggacagcgcgcgctgatcgtcgctccgccg
cggaccggcaagaccgtgctgctgcagaatatcgcccgagcgattaccgacaataacccg
gaagtcttcctcatcgtcctcctgatcgatgagcgaccggaagaagtcaccgacatgcag
cgctcggtgaatggcgaggtcatttcctcgaccttcgacgagcccgcgtcgcgccacgtc
caggttgccgagatggtcatcgaaaaggccaagcggctggtcgagcacaagaaggatgtt
gtgatcctgctcgattccatcacccggctgggccgcgcctataacacggtggtgccgtcc
tcgggcaaggtgctgaccggtggcgtcgatgccaatgcgctccagcgtcccaagcgcttc
ttcggtgccgcgcgcaatatcgaggagggcggttccttgtcgatcattgcaaccgcgctg
atcgataccggttcgaagatggacgaggtcattttcgaagagttcaagggcaccggcaac
agcgaaatcgtgctcgaccgcaaggtcagcgacaagcgcatcttcccgtcgctggatgtg
ggcaagtccggtactcgcaaggaagaactgctggtcgaccaggccacgctcagtaagatg
tgggtgctgcgccggatcctgatgcaaatgggcacgatcgacgcgatgcagttccttctc
gacaagatgaaggacgccaagtcgaacgaggatttcttcgcctcgatgaaccagtag
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