Sphingomonas xanthus: FMM02_08520
Help
Entry
FMM02_08520 CDS
T07168
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sxa
Sphingomonas xanthus
Pathway
sxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FMM02_08520 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxa03019
]
FMM02_08520 (rnr)
03016 Transfer RNA biogenesis [BR:
sxa03016
]
FMM02_08520 (rnr)
Enzymes [BR:
sxa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FMM02_08520 (rnr)
Messenger RNA biogenesis [BR:
sxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FMM02_08520 (rnr)
Transfer RNA biogenesis [BR:
sxa03016
]
Prokaryotic type
tRNA degradation factors
FMM02_08520 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
QDP19995
UniProt:
A0A516ISW4
LinkDB
All DBs
Position
1685382..1687613
Genome browser
AA seq
743 aa
AA seq
DB search
MPRKQPPGLPTAKQILDFIEGSDQPAGKREIARAFGLKGNEKIALKSLLKDMADEGLIDS
AAGRAFHKMGGVPKVTVLRVVSVDDGQVWATPESWHADTPAPKLRVIERSRGKGPRSALG
LNDRILARTEEAGKGHVAHVMKKLARAAELLLGVVRQEGERYFLTPVDKKERRELPISDL
KDAQPGDLVLAEPSGRPPRTSARVDAILGDPFAPRSFSLIAIHKHGLRDEFRDEAIAEAT
KVAGQPLGDREDLTALPIVAIDPEDARDHDDAIWASPRDDGDGWDAIVAIADVSFYVRPG
SELDREARARGNSVYFPDRVVPMLPHELSSDICSLKQGQLRAAMACHLHVGKDGALKSWR
FSRAKICVFANIAYENAQAAYDGTPGLVDPRLVDTALKPLWECWRALLKAREKREPLELD
LPERRVMLDEKGRILSVAPRERLDAHRLVEDYMIAANVAAAKALERKKAPVMYRVHEAPS
REKLVALKDYLATFDLEFALGQVIKPATFNRIIDRIGPDHDARPEIMEQLLRTQMQARYG
PEPLGHFGLSLASYAHFTSPIRRYADLLVHRALVTAHGLGEGGLPKADAEDFTTIGEHIS
MLERRAMEAERETVDRYVAAFLADKVGQILRCRITGVQPFGFFATVEDLGGDGLVPAAIL
GNEYFRYDEAARALIGEETGETFRVGQHLELKLAEANPASGALRFELPEGKFAAPRRNDS
RRDRVRPPKRGRPGNIRHQGKRR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcaaacagccccccggcctgccgaccgccaagcagatcctcgactttatcgaa
ggtagcgaccagcccgccggcaagcgggaaatcgcgcgggcgttcgggttgaagggcaat
gaaaagatcgccctgaagtcgctgctcaaggacatggccgatgaagggctgatcgacagc
gccgcggggcgtgccttccacaagatgggcggcgtcccgaaagttaccgtgcttcgtgtc
gtgtcggtcgacgatgggcaggtctgggcgacgccggaaagctggcatgccgacacccct
gcgccgaaactgcgggtgatcgaacgttcccgggggaaggggccccgctcggcccttggc
ctcaacgaccgcattctcgctcgcaccgaggaagcggggaaggggcatgtcgcccatgtg
atgaagaagctggcgcgcgccgccgaactgttgctcggcgtcgtccgtcaggagggtgag
cgatatttcctgaccccggtcgacaagaaggaacggcgcgaactgccaatttcagacctg
aaggatgcgcagcccggcgacctggtgctggccgaaccatcgggccgcccgccgcgcacc
agcgcgcgggtcgacgcgatcctcggggaccctttcgccccgcggagcttcagtttgatc
gccattcacaaacatggccttcgcgatgagttccgggacgaggcgatcgccgaagcgacc
aaggttgccgggcagccgctgggcgaccgagaggacctcacggcgctgccgatcgtcgcc
atcgatccggaggatgcgcgtgatcatgacgatgcaatctgggcatcgccgcgcgacgat
ggcgatggatgggacgcgatcgtcgcgatcgccgatgtgagcttttatgtccgtccggga
agcgagctcgaccgcgaggcgcgggcgcggggcaacagcgtctatttccccgaccgggtg
gtgccgatgctgccgcacgaactgtcatcggacatctgttcgctgaagcaaggccagctg
cgcgcggcaatggcttgccaccttcatgtcggcaaggacggcgccctgaaaagctggcga
ttctcgcgcgccaagatttgcgtatttgcaaacattgcatatgagaatgcccaggcggcc
tatgacggaacgcccggcctggtcgatccccggctggtcgacacggcgctcaagcccctt
tgggaatgttggcgcgcgctgctcaaggcaagggagaaacgcgaaccgctcgagctcgac
ctgcccgaacggcgcgtgatgctcgacgaaaagggccggatcctctcggttgcgccgcgc
gaacggctcgacgcccatcgcctcgtcgaagattatatgatcgccgccaatgtcgcggca
gccaaggcgctggaacgcaagaaggcgccggtgatgtaccgtgtccacgaagcgccaagc
cgcgagaagctggtcgcgctcaaggactatctcgcgaccttcgacctcgaatttgcgctg
ggacaggtgatcaagccggcgacgtttaatcgcatcattgaccgcatcggccccgatcat
gacgcgcgcccggaaatcatggagcagcttttgcgcacccagatgcaggcacgctacggc
cctgaaccgctgggccatttcgggctttcgctggcgagctacgcgcattttacttcgccc
attcgccgttatgccgatcttctcgtccaccgtgcgctggtcaccgcccatggccttgga
gaaggcgggctacccaaagcggacgccgaggatttcaccaccatcggcgagcatatctcc
atgctagaacgtcgggcgatggaggccgaacgcgagacggtcgaccgctatgtcgcggcg
ttcctcgccgacaaggtcggacagatcctgcgctgccggatcaccggcgtgcagccgttc
ggcttcttcgcgacggtcgaggatctgggtggagatggattggtgccggcggcgatcctc
ggcaacgaatattttcgttacgacgaggcagcgcgcgccctcatcggcgaggagacaggg
gaaaccttccgggtcggccagcaccttgagctgaagctggccgaagctaacccggcctcg
ggcgcgctccgcttcgagcttcccgagggcaagttcgcggcgccgcgccgtaacgacagc
cgccgcgaccgggtccgcccgccgaaacgcggccggcctggcaatattcgccaccagggc
aagcgccgctga
DBGET
integrated database retrieval system
