Streptomyces xiamenensis: SXIM_28100
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Entry
SXIM_28100 CDS
T03904
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sxi
Streptomyces xiamenensis
Pathway
sxi00040
Pentose and glucuronate interconversions
sxi01100
Metabolic pathways
sxi02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sxi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
SXIM_28100
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SXIM_28100
Enzymes [BR:
sxi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
SXIM_28100
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Arteri_env
Motif
Other DBs
NCBI-ProteinID:
AKG44194
UniProt:
A0A0F7FW86
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All DBs
Position
3042421..3043398
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AA seq
325 aa
AA seq
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MRRTSARFKLASVAAIATAVATLGALTASSGSAAEVPQDTVSTLAVGSPTGFGAGTTGGA
GGTTVTVTNASQFTEAVQRSGAVQVRVNGTISLSSMTKVSANTSILGVGTSGRITGSGLN
VSGVSNVIIQNLTFSGSNDDAINIENSTRVWVDHNTLSSAYDGLVDIKRASDNITVSWNR
VFSHDKTMLLGHDDGNASQDRGKLRVSYHHNWFDGTNQRNPRVRFGNPVHVYNNYYGGVT
SYGVASTKEAGVLVEGNYFENTKDPFHLGEGSSPAGTLVARNNHFVNSGSGQAGGSVNGI
PYGYSLDAASSVKSIVQSGAGAGKI
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaggacgagcgcaaggttcaagctggcatcggtcgcggccatcgcgaccgccgtg
gcgacgctgggcgcactgaccgcctccagcggatcggccgccgaagtaccgcaggacacc
gtgtcgaccctcgccgtcggcagccccaccggcttcggggccggcaccaccggcggtgcg
ggcggcaccacggtgaccgtcaccaacgccagccagttcaccgaggccgtgcagcgctcc
ggcgcggtccaggtccgggtcaacggcacgatctcgctcagctcgatgaccaaggtctcc
gccaacacgagcatcctcggggtcggcaccagcggccggatcaccggcagcggcctcaac
gtgagcggcgtcagcaacgtcatcatccagaacctgaccttctccggttcgaacgacgac
gccatcaacatcgagaactcgacccgggtctgggtcgaccacaacacgctgtccagcgcc
tacgacggcctcgtggacatcaagcgggcctcggacaacatcaccgtctcctggaaccgc
gtcttcagtcacgacaagaccatgctgctgggccacgacgacggcaacgcctcccaggac
cggggcaagctgcgggtcagctaccaccacaactggttcgacggcaccaaccagcgcaac
ccccgggtccgcttcggcaacccggtgcacgtgtacaacaactactacggcggggtgacc
agttacggggtcgcctccaccaaggaagccggcgtcctggtcgagggcaactacttcgag
aacaccaaggaccccttccacctcggtgagggctcgtccccggccggcaccctggtcgcc
cgcaacaaccacttcgtcaactccggttcgggccaggccggcggttcggtgaacggcatc
ccgtacggctacagcctcgacgcggcgtccagcgtcaagtcgatcgtccagtcgggcgcg
ggcgccgggaagatctga
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